Mercurial > repos > jjohnson > snpeff_with_dep

diff snpEff.xml @ 5:c641d515de2e

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Add stdio tags
author Jim Johnson <jj@umn.edu>
date Fri, 14 Sep 2012 13:12:02 -0500
parents ebe280eca4a4
children e9e4ff80e72b
line wrap: on
line diff
--- a/snpEff.xml	Fri Sep 14 07:51:23 2012 -0500
+++ b/snpEff.xml	Fri Sep 14 13:12:02 2012 -0500
@@ -481,7 +481,10 @@
 		</data>
 		<data format="html" name="statsFile" />
 	</outputs>
-
+        <stdio>
+          <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
+          <exit_code range="1:"  level="fatal"   description="Error" />
+        </stdio>
 	<help>
 
 This tool calculate the effect of variants (SNPs/MNPs/Insertions) and deletions.