Mercurial > repos > jjohnson > snpeff_with_dep

diff snpSift_annotate.xml @ 17:aab5e0adb26d

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Remove environment requirement
author Jim Johnson <jj@umn.edu>
date Fri, 21 Sep 2012 18:23:28 -0500
parents ef4598ea7179
children 1cae7fb31da7
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--- a/snpSift_annotate.xml	Fri Sep 21 16:20:13 2012 -0500
+++ b/snpSift_annotate.xml	Fri Sep 21 18:23:28 2012 -0500
@@ -6,7 +6,6 @@
 	-->
 	<requirements>
 		<requirement type="package" version="1.7">SnpSift</requirement>
-		<requirement type="set_environment">JAVA_JAR_PATH </requirement>
 	</requirements>
 	<command>java -Xmx6G -jar \$JAVA_JAR_PATH/SnpSift.jar annotate -q $dbSnp $input > $output </command>
 	<inputs>