Mercurial > repos > jjohnson > snpeff_with_dep

diff tool_dependencies.xml @ 16:24c77a318a0f

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Fix SnpSift dependency
author Jim Johnson <jj@umn.edu>
date Fri, 21 Sep 2012 16:20:13 -0500
parents bd23bbee9883
children 4daa36729f67
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--- a/tool_dependencies.xml	Fri Sep 21 16:06:58 2012 -0500
+++ b/tool_dependencies.xml	Fri Sep 21 16:20:13 2012 -0500
@@ -23,7 +23,7 @@
     <package name="SnpSift" version="1.7">
         <install version="1.0">
             <actions>
-                <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action>
+                <action type="shell_command">mkdir SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR</destination_directory>
@@ -36,6 +36,5 @@
         <readme>
         </readme>
     </package>
-
 </tool_dependency>