Mercurial > repos > jjohnson > snpeff_with_dep

diff snpEff.xml @ 20:1cae7fb31da7

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SnpEffv3.1
author Jim Johnson <jj@umn.edu>
date Mon, 26 Nov 2012 15:54:26 -0600
parents aab5e0adb26d
children 4430626bd994
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--- a/snpEff.xml	Fri Sep 21 18:52:07 2012 -0500
+++ b/snpEff.xml	Mon Nov 26 15:54:26 2012 -0600
@@ -6,7 +6,7 @@
 	<command>java -Xmx6G -jar /path/to/your/snpEff/snpEff.jar eff -c /path/to/your/snpEff/snpEff/snpEff.config $inputFormat $offset -upDownStreamLen $udLength $filterIn $filterHomHet -no $filterOut -stats $statsFile $genomeVersion $input > $output </command>
 	-->
 	<requirements>
-		<requirement type="package" version="3.0">snpEff</requirement>
+		<requirement type="package" version="3.1">snpEff</requirement>
 	</requirements>
 	<command>java -Xmx6G -jar \$JAVA_JAR_PATH/snpEff.jar eff -c \$JAVA_JAR_PATH/snpEff.config -i $inputFormat -o $outputFormat -upDownStreamLen $udLength $filterIn $filterHomHet -no $filterOut -stats $statsFile $genomeVersion $input > $output </command>
 	<inputs>