Mercurial > repos > jjohnson > snpeff_with_dep
comparison snpEff_download.xml @ 24:f22f28cd881e
Update for snpEff v3.2
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 07 May 2013 14:58:15 -0500 |
| parents | 50c1a8ff6c82 |
| children |
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| 23:50c1a8ff6c82 | 24:f22f28cd881e |
|---|---|
| 1 <tool id="snpEff_download" name="SnpEff Download" version="3.1"> | 1 <tool id="snpEff_download" name="SnpEff Download" version="3.2"> |
| 2 <description>Download a new database</description> | 2 <description>Download a new database</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.1">snpEff</requirement> | 4 <requirement type="package" version="3.2">snpEff</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command>java -jar \$JAVA_JAR_PATH/snpEff.jar download -c \$JAVA_JAR_PATH/snpEff.config $genomeVersion > $logfile </command> | 6 <command>java -jar \$JAVA_JAR_PATH/snpEff.jar download -c \$JAVA_JAR_PATH/snpEff.config $genomeVersion > $logfile </command> |
| 7 <inputs> | 7 <inputs> |
| 8 <param name="genomeVersion" type="select" label="Genome"> | 8 <param name="genomeVersion" type="select" label="Genome"> |
| 9 <options from_file="snpeffect_genomedb.loc"> | 9 <options from_file="snpeffect_genomedb.loc"> |