comparison snpSift_caseControl.xml @ 5:c641d515de2e

Add stdio tags

4:ceaa79a5ee16

		<param name="caseControStr" type="text" label="Case / Control" size="50"/>
	</inputs>
	<outputs>
		<data format="vcf" name="output" />
	</outputs>

	<help>

Count samples are in 'case' and 'control' groups. You can count 'homozygous', 'heterozygous' or 'any' variants. Case and control are defined by a string containing plus and minus symbols ('+' and '-') where '+' is case and '-' is control. This command adds two annotations to the VCF file.

5:c641d515de2e

		<param name="caseControStr" type="text" label="Case / Control" size="50"/>
	</inputs>
	<outputs>
		<data format="vcf" name="output" />
	</outputs>
        <stdio>
          <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
          <exit_code range="1:"  level="fatal"   description="Error" />
        </stdio>

	<help>

Count samples are in 'case' and 'control' groups. You can count 'homozygous', 'heterozygous' or 'any' variants. Case and control are defined by a string containing plus and minus symbols ('+' and '-') where '+' is case and '-' is control. This command adds two annotations to the VCF file.