Mercurial > repos > jjohnson > snpeff_with_dep
comparison tool_dependencies.xml @ 15:bd23bbee9883
Fix SnpSift dependency
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 21 Sep 2012 16:06:58 -0500 |
| parents | ef4598ea7179 |
| children | 24c77a318a0f |
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| 14:ef4598ea7179 | 15:bd23bbee9883 |
|---|---|
| 22 </package> | 22 </package> |
| 23 <package name="SnpSift" version="1.7"> | 23 <package name="SnpSift" version="1.7"> |
| 24 <install version="1.0"> | 24 <install version="1.0"> |
| 25 <actions> | 25 <actions> |
| 26 <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action> | 26 <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action> |
| 27 <action type="move_directory_files"> | |
| 28 <source_directory>.</source_directory> | |
| 29 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 30 </action> | |
| 27 <action type="set_environment"> | 31 <action type="set_environment"> |
| 28 <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable> | 32 <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable> |
| 29 </action> | 33 </action> |
| 30 </actions> | 34 </actions> |
| 31 </install> | 35 </install> |
| 36 <readme> | |
| 37 </readme> | |
| 38 </package> | |
| 32 | 39 |
| 33 </tool_dependency> | 40 </tool_dependency> |
| 34 | 41 |