Mercurial > repos > jjohnson > snpeff_with_dep
comparison tool_dependencies.xml @ 16:24c77a318a0f
Fix SnpSift dependency
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 21 Sep 2012 16:20:13 -0500 |
| parents | bd23bbee9883 |
| children | 4daa36729f67 |
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| 15:bd23bbee9883 | 16:24c77a318a0f |
|---|---|
| 21 </readme> | 21 </readme> |
| 22 </package> | 22 </package> |
| 23 <package name="SnpSift" version="1.7"> | 23 <package name="SnpSift" version="1.7"> |
| 24 <install version="1.0"> | 24 <install version="1.0"> |
| 25 <actions> | 25 <actions> |
| 26 <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action> | 26 <action type="shell_command">mkdir SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action> |
| 27 <action type="move_directory_files"> | 27 <action type="move_directory_files"> |
| 28 <source_directory>.</source_directory> | 28 <source_directory>.</source_directory> |
| 29 <destination_directory>$INSTALL_DIR</destination_directory> | 29 <destination_directory>$INSTALL_DIR</destination_directory> |
| 30 </action> | 30 </action> |
| 31 <action type="set_environment"> | 31 <action type="set_environment"> |
| 34 </actions> | 34 </actions> |
| 35 </install> | 35 </install> |
| 36 <readme> | 36 <readme> |
| 37 </readme> | 37 </readme> |
| 38 </package> | 38 </package> |
| 39 | |
| 40 </tool_dependency> | 39 </tool_dependency> |
| 41 | 40 |