# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1421258016 21600
# Node ID 5d6f3622b99d0ce864dd13a5a99f7c36f9fa4636
# Parent  9efd0d32fe8a6f954d13e34fbd648eabf30718de
Default to snpeff_version: SnpEff4.0

diff -r 9efd0d32fe8a -r 5d6f3622b99d snpeff.py
--- a/snpeff.py	Tue Jan 13 12:30:20 2015 -0600
+++ b/snpeff.py	Wed Jan 14 11:53:36 2015 -0600
@@ -12,7 +12,7 @@
     """Class describing a SnpEff genome build"""
     file_ext = "snpeffdb"
     MetadataElement( name="genome_version", default=None, desc="Genome Version", readonly=True, visible=True, no_value=None )
-    MetadataElement( name="snpeff_version", default=None, desc="SnpEff Version", readonly=True, visible=True, no_value=None )
+    MetadataElement( name="snpeff_version", default="SnpEff4.0", desc="SnpEff Version", readonly=True, visible=True, no_value=None )
     MetadataElement( name="regulation", default=[], desc="Regulation Names", readonly=True, visible=True, no_value=[], optional=True)
     MetadataElement( name="annotation", default=[], desc="Annotation Names", readonly=True, visible=True, no_value=[], optional=True)
 
@@ -52,6 +52,7 @@
                         genome_version = os.path.basename(root)
                         dataset.metadata.genome_version = genome_version
                         # read the first line of the gzipped snpEffectPredictor.bin file to get the SnpEff version
+                        #   Starting with version 4.1, this should be: SnpEff 4.1
                         snpeff_version = self.getSnpeffVersionFromFile(os.path.join(root,fname))
                         if snpeff_version:
                             dataset.metadata.snpeff_version = snpeff_version