# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1381161584 18000
# Node ID 47ddc9f4d0b674d250b078dee8033df0b64c4fab
# Parent  a8f4ebfb8253696e7031ccf2d0c625ad1b3e41ba
Add tests to datamanagers

diff -r a8f4ebfb8253 -r 47ddc9f4d0b6 data_manager/data_manager_snpEff_databases.xml
--- a/data_manager/data_manager_snpEff_databases.xml	Fri Oct 04 09:31:27 2013 -0500
+++ b/data_manager/data_manager_snpEff_databases.xml	Mon Oct 07 10:59:44 2013 -0500
@@ -15,7 +15,16 @@
           <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
           <exit_code range="1:"  level="fatal"   description="Error" />
         </stdio>
-
+        <tests>
+            <test>
+                <output name="out_file">
+                    <assert_contents>
+                        <!-- Check that a genome was added -->
+                        <has_text text="GRCh37.72" />
+                    </assert_contents>
+                </output>
+            </test>
+        </tests>
 	<help>
 
 This tool updatess the list of SnpEff databases for the SnpEff Download data manager.
diff -r a8f4ebfb8253 -r 47ddc9f4d0b6 data_manager/data_manager_snpEff_download.xml
--- a/data_manager/data_manager_snpEff_download.xml	Fri Oct 04 09:31:27 2013 -0500
+++ b/data_manager/data_manager_snpEff_download.xml	Mon Oct 07 10:59:44 2013 -0500
@@ -22,7 +22,19 @@
         <exit_code range=":-1"  level="fatal"   description="Error: Cannot open file" />
         <exit_code range="1:"  level="fatal"   description="Error" />
     </stdio>
-
+    <tests>
+        <test>
+            <param name="genome_databases" value="GRCh37.71"/>
+            <output name="out_file">
+                <assert_contents>
+                    <!-- Check that a genome was added -->
+                    <has_text text="GRCh37.71" />
+                    <has_text text="snpeff_regulationdb" />
+                    <has_text text="snpeff_annotations" />
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
     <help>
 
 This tool downloads a SnpEff database.