# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1421182897 21600
# Node ID 2e37b58fc24dc9a40eb48f2833c0528fd4481545
# Parent  36f3c82323e6bdbfb71521d557499212a89c2d19
Fix some versions

diff -r 36f3c82323e6 -r 2e37b58fc24d snpEff.xml
--- a/snpEff.xml	Tue Jan 13 13:36:11 2015 -0600
+++ b/snpEff.xml	Tue Jan 13 15:01:37 2015 -0600
@@ -118,7 +118,7 @@
                 <param name="genomeVersion" type="select" label="Genome">
                     <!--GENOME    DESCRIPTION-->
                     <options from_data_table="snpeffv_genomedb">
-                           <filter type="static_value" name="snpeff_version" value="SnpEff4.1" column="1"/>
+                           <filter type="static_value" name="snpeff_version" value="SnpEff4.0" column="1"/>
                            <filter type="unique_value" column="2" />
                     </options>
                 </param>
@@ -126,19 +126,19 @@
                        <help>These are available for only a few genomes</help>
                        <options from_data_table="snpeffv_annotations">
                            <filter type="param_value" ref="genomeVersion" key="genome" column="2" />
-                           <filter type="unique_value" column="1" />
+                           <filter type="unique_value" column="3" />
                        </options>
                 </param>
                 <param name="regulation" type="select" display="checkboxes" multiple="true" label="Non-coding and regulatory annotation">
                        <help>These are available for only a few genomes</help>
                        <options from_data_table="snpeffv_regulationdb">
                            <filter type="param_value" ref="genomeVersion" key="genome" column="2" />
-                           <filter type="unique_value" column="1" />
+                           <filter type="unique_value" column="3" />
                        </options>
                 </param>
             </when>
             <when value="history">
-                <param format="snpeffdbv41" name="snpeff_db" type="data" label="SnpEff Genome Version Data"/>
+                <param format="snpeffdbv40" name="snpeff_db" type="data" label="SnpEff Genome Version Data"/>
                 <!-- From metadata -->
                 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional annotations">
                     <help>These are available for only a few genomes</help>
diff -r 36f3c82323e6 -r 2e37b58fc24d snpEff_download.xml
--- a/snpEff_download.xml	Tue Jan 13 13:36:11 2015 -0600
+++ b/snpEff_download.xml	Tue Jan 13 15:01:37 2015 -0600
@@ -16,7 +16,7 @@
         </param>
     </inputs>
     <outputs>
-        <data format="snpeffdbv41" name="snpeff_db" label="${tool.name} ${genome_version}" />
+        <data format="snpeffdbv40" name="snpeff_db" label="${tool.name} ${genome_version}" />
     </outputs>
     <expand macro="stdio" />
     <help>