diff snpEff_databases.xml @ 22:bb0797deab78 draft

Uploaded

--- a/snpEff_databases.xml	Wed Jan 14 12:03:21 2015 -0600
+++ b/snpEff_databases.xml	Wed Dec 09 10:20:13 2015 -0500
@@ -1,26 +1,28 @@
 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0">
     <description></description>
-    <expand macro="requirements" />
     <macros>
         <import>snpEff_macros.xml</import>
     </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version_command" />
     <command>
 <![CDATA[
-    java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases |  grep -v '^---' | sed 's/^Genome/#Genome/' | sed  's/  *//g' > $snpeff_dbs 
+    java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases |  grep -v '^---' | sed 's/^Genome/#Genome/' | sed  's/  *//g' > $snpeff_dbs
 ]]>
     </command>
     <inputs>
     </inputs>
     <outputs>
-        <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" />
+        <data format="tabular" name="snpeff_dbs" label="${tool.name} @SNPEFF_VERSION@ available databases" />
     </outputs>
-    <expand macro="stdio" />
-    <help>
+    <help><![CDATA[
 
 @EXTERNAL_DOCUMENTATION@
 
 @CITATION_SECTION@
 
+]]>
     </help>
 </tool>