Mercurial > repos > jjohnson > snpeff
diff data_manager/data_manager_snpEff_databases.xml @ 5:8952990fcab9
Update to snpEff version 3.4 and add data managers to download snpEff genome reference databases
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 27 Nov 2013 09:11:32 -0600 |
| parents | 47ddc9f4d0b6 |
| children |
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--- a/data_manager/data_manager_snpEff_databases.xml Mon Oct 07 10:59:44 2013 -0500 +++ b/data_manager/data_manager_snpEff_databases.xml Wed Nov 27 09:11:32 2013 -0600 @@ -1,7 +1,7 @@ -<tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.3" tool_type="manage_data"> +<tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.4" tool_type="manage_data"> <description>Read the list of available snpEff databases</description> <requirements> - <requirement type="package" version="3.3">snpEff</requirement> + <requirement type="package" version="3.4">snpEff</requirement> </requirements> <command interpreter="python"> data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file" @@ -33,6 +33,9 @@ For information about snpEff: http://snpEff.sourceforge.net +Please cite: +"A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process] + </help> </tool>