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diff snpSift_caseControl.xml @ 2:6ad9205c1307

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Update to SnpEff version 3.3
author Jim Johnson <jj@umn.edu>
date Fri, 04 Oct 2013 09:09:29 -0500
parents e1d9f6a0ad53
children 8952990fcab9
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--- a/snpSift_caseControl.xml	Thu Jul 04 09:49:15 2013 -0500
+++ b/snpSift_caseControl.xml	Fri Oct 04 09:09:29 2013 -0500
@@ -1,14 +1,14 @@
-<tool id="snpSift_caseControl" name="SnpSift CaseControl" version="3.2">
+<tool id="snpSift_caseControl" name="SnpSift CaseControl" version="3.3">
   <description>Count samples are in 'case' and 'control' groups.</description>
   <!-- 
     You will need to change the path to wherever your installation is.
     You can change the amount of memory used, just change the -Xmx parameter (e.g. use -Xmx2G for 2Gb of memory)
   -->
   <requirements>
-                <requirement type="package" version="3.2">snpEff</requirement>
+                <requirement type="package" version="3.3">snpEff</requirement>
   </requirements>
   <command>
-    java -Xmx1G -jar \$JAVA_JAR_PATH/SnpSift.jar caseControl -q 
+    java -Xmx1G -jar \$SNPEFF_JAR_PATH/SnpSift.jar caseControl -q 
     #if $name.__str__.strip() != '':
       -name $name
     #end if