Mercurial > repos > jjohnson > snpeff
diff snpSift_annotate.xml @ 2:6ad9205c1307
Update to SnpEff version 3.3
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 04 Oct 2013 09:09:29 -0500 |
| parents | e1d9f6a0ad53 |
| children | 8952990fcab9 |
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--- a/snpSift_annotate.xml Thu Jul 04 09:49:15 2013 -0500 +++ b/snpSift_annotate.xml Fri Oct 04 09:09:29 2013 -0500 @@ -1,14 +1,14 @@ -<tool id="snpSift_annotate" name="SnpSift Annotate" version="3.2"> +<tool id="snpSift_annotate" name="SnpSift Annotate" version="3.3"> <description>Annotate SNPs from dbSnp</description> <!-- You will need to change the path to wherever your installation is. You can change the amount of memory used, just change the -Xmx parameter (e.g. use -Xmx2G for 2Gb of memory) --> <requirements> - <requirement type="package" version="3.2">snpEff</requirement> + <requirement type="package" version="3.3">snpEff</requirement> </requirements> <command> - java -Xmx6G -jar \$JAVA_JAR_PATH/SnpSift.jar $annotate_cmd + java -Xmx6G -jar \$SNPEFF_JAR_PATH/SnpSift.jar $annotate_cmd #if $annotate.id : -id #elif $annotate.info_ids.__str__.strip() != '' :