Mercurial > repos > jjohnson > snpeff
comparison data_manager/data_manager_snpEff_databases.xml @ 2:6ad9205c1307
Update to SnpEff version 3.3
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 04 Oct 2013 09:09:29 -0500 |
| parents | e1d9f6a0ad53 |
| children | 47ddc9f4d0b6 |
comparison
equal
deleted
inserted
replaced
| 1:bea875f081e8 | 2:6ad9205c1307 |
|---|---|
| 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.2" tool_type="manage_data"> | 1 <tool id="data_manager_snpeff_databases" name="SnpEff Databases" version="3.3" tool_type="manage_data"> |
| 2 <description>Read the list of available snpEff databases</description> | 2 <description>Read the list of available snpEff databases</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.2">snpEff</requirement> | 4 <requirement type="package" version="3.3">snpEff</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python"> | 6 <command interpreter="python"> |
| 7 data_manager_snpEff_databases.py --jar_path \$JAVA_JAR_PATH/snpEff.jar "$out_file" | 7 data_manager_snpEff_databases.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar "$out_file" |
| 8 </command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |
| 10 </inputs> | 10 </inputs> |
| 11 <outputs> | 11 <outputs> |
| 12 <data name="out_file" format="data_manager_json"/> | 12 <data name="out_file" format="data_manager_json"/> |