# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1382014898 18000
# Node ID aaaa5a071ff0e03601e79e358f8f589690cf490b
# Parent  a82400332451e9bd0854d5bb8f190de03fe8f7d6
Update to SHEAR v 0.2.3

diff -r a82400332451 -r aaaa5a071ff0 shear_assemble.xml
--- a/shear_assemble.xml	Tue Jul 16 12:38:48 2013 -0500
+++ b/shear_assemble.xml	Thu Oct 17 08:01:38 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.1">
+<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.2">
   <description>create a personal genome from sdi</description>
   <requirements>
-    <requirement type="package" version="0.1.2">shear</requirement>
+    <requirement type="package" version="0.2.3">shear</requirement>
   </requirements>
   <!--
   <version_command></version_command>
diff -r a82400332451 -r aaaa5a071ff0 shear_sv.xml
--- a/shear_sv.xml	Tue Jul 16 12:38:48 2013 -0500
+++ b/shear_sv.xml	Thu Oct 17 08:01:38 2013 -0500
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="shear_sv" name="SHEAR-SV" version="0.0.1">
+<tool id="shear_sv" name="SHEAR-SV" version="0.0.2">
   <description>find SVs and estimate the heterogeneity levels from a BAM</description>
   <requirements>
-    <requirement type="package" version="0.1.2">shear</requirement>
+    <requirement type="package" version="0.2.3">shear</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
     <requirement type="package" version="0.6.2">bwa</requirement>
     <requirement type="package" version="1.0.1">crest</requirement>
diff -r a82400332451 -r aaaa5a071ff0 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jul 16 12:38:48 2013 -0500
+++ b/tool_dependencies.xml	Thu Oct 17 08:01:38 2013 -0500
@@ -17,8 +17,8 @@
   cap3 which only has binary executable downloads from:   http://seq.cs.iastate.edu/cap3.html
           </readme>
     </package>
-    <package name="shear" version="0.1.2">
-        <repository changeset_revision="c2ab94f12a7a" name="package_shear_0_1_2" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="shear" version="0.2.3">
+        <repository changeset_revision="8bcf811b9c1e" name="package_shear_0_2_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
 
 </tool_dependency>