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Use shear_wrapper.py to generate reference indexes when needed
author Jim Johnson <jj@umn.edu>
date Tue, 16 Jul 2013 12:38:48 -0500
parents ea76da1e7281
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SHEAR: Sample Heterogeneity Estimation and Assembly by Reference

SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.

Source code is available upon request (please contact landman@cs.umn.edu).

SHEAR will be made publicly available upon publication.

http://vk.cs.umn.edu/SHEAR/