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Fix test case
author Jim Johnson <jj@umn.edu>
date Thu, 30 Jan 2014 13:10:12 -0600
parents 08439b004404
children
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@SOLEXA2_0414:3:1:11146:1065#0/1
NTGCGATCAAGGGATAAGGGTGGGACACTGCGGGAGATTCAGAGTAACAGTTNTAAGGTCTGGTTTGTCCGGACACTGCGGNAGA
+SOLEXA2_0414:3:1:11146:1065#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:12658:1069#0/1
NCTACATACAGTTGTAAGGTCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTATGTAGCAGATCGGAAGAGNGGT
+SOLEXA2_0414:3:1:12658:1069#0/1
BOIOKPTTTT_________________________________________________TYYYYY___________Q__BBBBBB
@SOLEXA2_0414:3:1:17191:1069#0/1
NAGCAATCTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTCCACAAGTTTTGTTTAGAGGAGAACGAGCGCCCTCTNGAT
+SOLEXA2_0414:3:1:17191:1069#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:6993:1073#0/1
NTGGATCTCCCGCAGTGTCCTAAATGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGAC
+SOLEXA2_0414:3:1:6993:1073#0/1
BJJJJVVVWVb__bb______bb________________b__________Y[[[[b__b__bb__YYYYY_______________
@SOLEXA2_0414:3:1:10702:1075#0/1
NCTACATTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACGACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGC
+SOLEXA2_0414:3:1:10702:1075#0/1
BIHKIQTQTQ[[[YPVTVVVWWWWVRRPRTVPTTTVVVTTVTVTVVVVVTTVVVVRRPLRTQTJQ_____YYVYYVVTNVXWWVW
@SOLEXA2_0414:3:1:12096:1078#0/1
NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT
+SOLEXA2_0414:3:1:12096:1078#0/1
BEKEEJOHHHTTVVV_____[[Y[[WWVXXXVXXWRRPTTWXXXWWQQWXWWWTWKKLLLLLLHRVTVVNTTVVT_____YWYYY
@SOLEXA2_0414:3:1:12624:1071#0/1
NTGCGATAGTGTCCTGTGTGCCCCTGCACATGCCTGTGGCTTCCCGGGCTTCTGACCACATCCCCACCATCTTTGTGCCTCCGGA
+SOLEXA2_0414:3:1:12624:1071#0/1
BQLLMTTTTT__________YYYYY________b___________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:13769:1080#0/1
NAGCAATCTAAAACCCAAAGTATATAAGAAGGGTATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCA
+SOLEXA2_0414:3:1:13769:1080#0/1
BPPPPXXXXX_b_b_b_bbb_b___YYYYYWXXXXWWWWW_b__b_____QQQQQb_b_b_b_bQQZ___b_b____________
@SOLEXA2_0414:3:1:13956:1081#0/1
NTGCGATCTCAGTCTCCTGAGTAGCTGGGATCTAGCACTCAGAAATGAGAGATGAAAAGGCTAATTCACAAAGTAGCCAAAAATA
+SOLEXA2_0414:3:1:13956:1081#0/1
BPPPNWWWWW__b__b_bb_____b_b__b__b_bb_bbb______________bb_____b__bbb__bYYYWY________YO
@SOLEXA2_0414:3:1:14801:1076#0/1
NTGCGATGGACCAGCTGGAAAATTGGTGTTGTCGTCGGTGCAAATTCTGTCACGTTTGTGGAAGGCGACATCAGGCTACAAGGGG
+SOLEXA2_0414:3:1:14801:1076#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:16010:1079#0/1
NAGCAATTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGT
+SOLEXA2_0414:3:1:16010:1079#0/1
BKJQQVWVVV_______________WYYYY_______________V____Y[[[[_________________________BBBBB
@SOLEXA2_0414:3:1:17165:1075#0/1
NTGCGATCTAGGACACTGCGGGAGATTCAGAGTACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCAGAGTAACA
+SOLEXA2_0414:3:1:17165:1075#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:19504:1081#0/1
NAGCAATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCACATAATAAGGTGTCAAAAT
+SOLEXA2_0414:3:1:19504:1081#0/1
BJJOJRRQQRYYYYY__b_______[[[[PWWTWWYYYYY[Y[[[YYYYUTTWVVY[YY[_______________VTTTVTVVTV
@SOLEXA2_0414:3:1:19703:1080#0/1
NAGCAATATTGAATTAAATATATGCCAGTGGACTACTAAAACCCAAAGTATATAAGAAGGGTATGGTTGATTATGTTTTTCTACA
+SOLEXA2_0414:3:1:19703:1080#0/1
BIKOIVWVVVY[Y[YVVTVTYYYYY_W___BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:6962:1084#0/1
NTGCGATCTGAATCTCCCGCAGTGTCCGGGTGGGGTCAGAAAAATGGGCAGCTCAACTGCAGGTACACGTAGTGCGACCAGTGCC
+SOLEXA2_0414:3:1:6962:1084#0/1
BEMEEKLQJJ__________Y[[[[XXXXXXWQQQQYYYY__QQQ___PWWWXWV_____BBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:8715:1091#0/1
NTGCGATCAACCATTCAGACACCAGCAGAAGTGTTCTGGAATCCTATGTGAGGGACATACATTCAGACCACGGCAGAAGTGTTCT
+SOLEXA2_0414:3:1:8715:1091#0/1
BGKEEHMKHL[[[[[_____Y[[[[_______________W_________YYYYY_______________[[Y[Y[[[Y[[[[[[
@SOLEXA2_0414:3:1:12077:1083#0/1
NAGCAATATGCTTTGGCCACAAAATAAGTGCACTGTGCAATATCAAGTGTTTCAGCAAGTTTTTGGAATCTCAAGCACATTTTGA
+SOLEXA2_0414:3:1:12077:1083#0/1
BJJJJQRPPObbb____b__b__QQQQQ_________b_____b_[[[[[______V_____________b____YY[[[b___O
@SOLEXA2_0414:3:1:13392:1083#0/1
NTGCGATCCGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGTCTGGTTTGTCCTATTTGTGTTTGAATTTGGCTCTACGTG
+SOLEXA2_0414:3:1:13392:1083#0/1
BKJQJORQPP_______________TWTWTWWWTTYYYYY_____YYYYWYYYYYYYYYYWWWWWVVTTV______Y_______B
@SOLEXA2_0414:3:1:14856:1092#0/1
NTGCGATGTGTCCTTAGGACAAACCAGACCTTACAACTGTAAGCCTGGCTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGA
+SOLEXA2_0414:3:1:14856:1092#0/1
BIIOHTTSTT_____[[[[YYYYYYVYYYY______________W[[[YY__________V[[[[____WXVVXX___W_XXWXV
@SOLEXA2_0414:3:1:17070:1089#0/1
NTGCGATCTGAATCTCCCGCAGTGTCCCACTCTTAGGTCACTTAGCATGTTCATTAGAGTACTCTGAATCTCCCGCAGTGTCCTC
+SOLEXA2_0414:3:1:17070:1089#0/1
BHMOGRTTTTY[[[Y__________TVVVTYVYYY____WYYYYRPRWRR[[Y[[_____WWWTWWTWWWYYYYY[R[[YYYYYY
@SOLEXA2_0414:3:1:18860:1082#0/1
NAGCAATACAGTTGTAAGGTCTGGTTTGTCCTCACTCAAATGTCATCTCGAATTGTAGTTCTCATAATGGCCGCATGTTGTGGGA
+SOLEXA2_0414:3:1:18860:1082#0/1
BHOKHSWTTT____________________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:18912:1089#0/1
NTGCGATCATCTGAGGAGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCA
+SOLEXA2_0414:3:1:18912:1089#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:3923:1105#0/1
NAGCAATAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTATTGCTCAGATCGGAAGAGCGGTTCAG
+SOLEXA2_0414:3:1:3923:1105#0/1
BNNNQVWVVV__bbb__b_bb____b________b__Z_______[[[[YYYYYY_____b___bb____YWWYYVVTVVYYYYY
@SOLEXA2_0414:3:1:6494:1099#0/1
NTGCGATTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTACAGTTGTAAGGTCTGGTTTGTCCTAGGCAGAATCGC
+SOLEXA2_0414:3:1:6494:1099#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:8413:1097#0/1
NTGCGATCCATACCCTTCTTATATACTTTGGGTTTTAGTAGTCCACTGGCATATATTTAATTCAATACATACTCATTAAGCAATG
+SOLEXA2_0414:3:1:8413:1097#0/1
BGIGEMQLNQ_______________VXXXX_____WWXXX[YY[[_____WYRYY___________V___YLYYYYYYPY_____
@SOLEXA2_0414:3:1:9865:1095#0/1
NCTACATTAATTGTTTTAATTTTTATTTATTTATTTTTTTGAGACGGAGTCTCGCTGATGTAGCAGATCGGAAGAGCGGTTCAGC
+SOLEXA2_0414:3:1:9865:1095#0/1
BKKJKRTTST_____QQQ_b[[[[[QQQQ_QQQbQQQQQQQ_________bb__________________[[[[Y__________
@SOLEXA2_0414:3:1:10606:1102#0/1
NTGCGATATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGTATTTTTGGCTACTTTGTGAAT
+SOLEXA2_0414:3:1:10606:1102#0/1
BMMMMTUTTRTTVWV_____b___b__b_QQQQ__[Y[[YYYYYY_______________[[[[[YYYQQQ____BBBBBBBBBB
@SOLEXA2_0414:3:1:11267:1102#0/1
NCTACATTACTCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACATGTAGCAGATCGGAAGAGCG
+SOLEXA2_0414:3:1:11267:1102#0/1
BEGGEJLHIK______________RTWWWWY[Y[[________________QM__YYYYYXWJVX_____BBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:13556:1104#0/1
NTGCGATTTACAACCGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTATCGCAAAGATCGGAAGAG
+SOLEXA2_0414:3:1:13556:1104#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:13625:1097#0/1
NTGCGATCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTATCGCAAAGATCGGAAGA
+SOLEXA2_0414:3:1:13625:1097#0/1
BJKJJTUUST___b_b_____b______________________________bW_bb__bb____[[Y[YYYYYY____BBBBBB
@SOLEXA2_0414:3:1:14055:1098#0/1
NAGCAATCTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAA
+SOLEXA2_0414:3:1:14055:1098#0/1
BMMMNWWWWWbbb________bb_______b_^__________bbb_________bb_b__b__b__b_bb____[Y[Y[VQWVV
@SOLEXA2_0414:3:1:14195:1099#0/1
NTGCGATCTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATATCGCAAAGATC
+SOLEXA2_0414:3:1:14195:1099#0/1
BPPPNVWVWV_b__bbb____bbb__bb__b_______b___bbQQ_b___bb_bb__b____b_b____b_bb___b____b__
@SOLEXA2_0414:3:1:15892:1106#0/1
NTGCGATAGACACATGAAGTTCCAAATTATTTTTTAACAATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGA
+SOLEXA2_0414:3:1:15892:1106#0/1
BPOQMVWVVV_bbb_bb_b_b__________QQQQQbbb_b_b___b__b__________b____Z___________b_b____Z
@SOLEXA2_0414:3:1:18397:1101#0/1
NTGCGATATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCC
+SOLEXA2_0414:3:1:18397:1101#0/1
BHIKHWTRTTYYYYYXXVWWYYYQQOOOWWY[[[[__QQ_WWWTWXXXWW_______________YYYYYXXXXXWWWWWYYYYR
@SOLEXA2_0414:3:1:4546:1111#0/1
NCTACATCAAAAACATGCGTATGGACAAACCAGACCTTACAACTGTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAAC
+SOLEXA2_0414:3:1:4546:1111#0/1
BOIHKLRNMQXWWWQQ______________________________________________^_____________________Y
@SOLEXA2_0414:3:1:5840:1112#0/1
NTGCGATCTTAAAAATTGTTAAAAAATAATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGT
+SOLEXA2_0414:3:1:5840:1112#0/1
BQKKJRQONNKRNNL__________QQQQQVVVTTSSRSSQYYYYYYYYYQQQQ______BBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:6252:1110#0/1
NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT
+SOLEXA2_0414:3:1:6252:1110#0/1
BKIKHNRROR_b____b_____________________b___bbb_QQ_______________Q_YYYYY___T________W__
@SOLEXA2_0414:3:1:6533:1111#0/1
NCTACATGAGGGCGCTCGTTCTCCTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGA
+SOLEXA2_0414:3:1:6533:1111#0/1
BPPPPWWVVV____bb_bbbbbb_bbb____bQQQQ_b___b_b_____bb_bb____b_bb__b_bbbbb__b___________
@SOLEXA2_0414:3:1:7569:1113#0/1
NAGCAATTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGAACATGGGAAGATAGAAG
+SOLEXA2_0414:3:1:7569:1113#0/1
BIKOOPTTTT_____QQQQ_YYYYYYYYYY_____YYYYY___________________________________YQYYY___Y_
@SOLEXA2_0414:3:1:7605:1117#0/1
NAGCAATCCTTTAGTTCTAGTGTCTAGGGATATGCAAAGTCAGAAAAAACCAGTCACCACCCAAAAGAAAATAGTGCAGACAAGG
+SOLEXA2_0414:3:1:7605:1117#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:13482:1108#0/1
NCTACATCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAATA
+SOLEXA2_0414:3:1:13482:1108#0/1
BLLLQVWWWVbb__bb___b_____b_____bb_b____________QQ_bbb_bY____OTVVOYVYYYVVSTTWWTTWYQQQQ
@SOLEXA2_0414:3:1:14990:1109#0/1
NTGCGATCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGCCTGGTTTGTCCTGGACACTGCG
+SOLEXA2_0414:3:1:14990:1109#0/1
BIGGJNRPOOYYYYYVWXWV_____YYRPWYYYYYXWWRWYYYYYVVTVTXXVWX_________Y[Y[[[_____YYYYY_____
@SOLEXA2_0414:3:1:15871:1113#0/1
NTGCGATATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGATCATGAGGACTCTTATAGGCCATGCTAAGACG
+SOLEXA2_0414:3:1:15871:1113#0/1
BJJOHRTRTT[QQQ[___b____b______[V[[[bbbbb_b___b_b_____________________________________
@SOLEXA2_0414:3:1:17840:1114#0/1
NAGCAATCTCTAGATTACTTATCATACCTAATACAATGTAAATAGTTGTTATACTGTATTGTTTAGGAAATAATGACAAGAAAAA
+SOLEXA2_0414:3:1:17840:1114#0/1
BOIIIVWWVV_____Y[[[[[[[W[TWTWRYYYYYY[YYY____R_____BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:18083:1109#0/1
NAGCAATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT
+SOLEXA2_0414:3:1:18083:1109#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:3606:1121#0/1
NTGCGATGCATTAATTGTGTCTTTAAGGGTTAAACAGAGGCTCACAACAGACTTGACAATACACAAACTATAGTAAGAACATGGG
+SOLEXA2_0414:3:1:3606:1121#0/1
BIIKHQTTSS[[[Y[_____YYYYYTWVVV_____b___^_________________________YYYYY_____BBBBBBBBBB
@SOLEXA2_0414:3:1:4029:1119#0/1
NAGCAATGGGAGAGTGTTGTTTTTGTCACTTGCCCCAGCAGAGCAGGGGTTTTGGAAGGAGAGGTCTTTAATAGCTTTGAAAATT
+SOLEXA2_0414:3:1:4029:1119#0/1
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:10939:1119#0/1
NCTACATACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTATGTAGCAGATCGGGAGAGCGGTTCAGCAGGAAGGC
+SOLEXA2_0414:3:1:10939:1119#0/1
BQKQLVWVWV_____[Y[[[__________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:11098:1122#0/1
NAGCAATGTTGAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTACCAAGTTTTGTACCTTTGTAGC
+SOLEXA2_0414:3:1:11098:1122#0/1
BEMGGQQORMVVVVTWWWWWOVTVVWRWWW_______________[[T[YTVTTV_____BBBBBBBBBBBBBBBBBBBBBBBBB
@SOLEXA2_0414:3:1:12110:1126#0/1
NTGCGATTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCAGATCGCAAAGATCGGAAGAGCGGTTCAGCAGGAATGCCG
+SOLEXA2_0414:3:1:12110:1126#0/1
BIIIHQRRRQ[[[[[b__bb_b___YYYYY_____UWWWT[T[[Y__bb_________Y______YYYYYQWWWW___S_BBBBB