Mercurial > repos > jjohnson > scythe
comparison test-data/trimmed_sequences.fastq @ 0:08439b004404
Uploaded
| author | jjohnson |
|---|---|
| date | Mon, 13 Jan 2014 14:57:53 -0500 |
| parents | |
| children | b0276d1141fe |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:08439b004404 |
|---|---|
| 1 @SOLEXA2_0414:3:1:11146:1065#0/1 | |
| 2 NTGCGATCAAGGGATAAGGGTGGGACACTGCGGGAGATTCAGAGTAACAGTTNTAAGGTCTGGTTTGTCCGGACACTGCGGNAGA | |
| 3 + | |
| 4 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 5 @SOLEXA2_0414:3:1:12658:1069#0/1 | |
| 6 NCTACATACAGTTGTAAGGTCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTATGTAGC | |
| 7 + | |
| 8 BOIOKPTTTT_________________________________________________TYYYYY____ | |
| 9 @SOLEXA2_0414:3:1:17191:1069#0/1 | |
| 10 NAGCAATCTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTCCACAAGTTTTGTTTAGAGGAGAACGAGCGCCCTCTNGAT | |
| 11 + | |
| 12 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 13 @SOLEXA2_0414:3:1:6993:1073#0/1 | |
| 14 NTGGATCTCCCGCAGTGTCCTAAATGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGAC | |
| 15 + | |
| 16 BJJJJVVVWVb__bb______bb________________b__________Y[[[[b__b__bb__YYYYY_______________ | |
| 17 @SOLEXA2_0414:3:1:10702:1075#0/1 | |
| 18 NCTACATTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACGACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGC | |
| 19 + | |
| 20 BIHKIQTQTQ[[[YPVTVVVWWWWVRRPRTVPTTTVVVTTVTVTVVVVVTTVVVVRRPLRTQTJQ_____YYVYYVVTNVXWWVW | |
| 21 @SOLEXA2_0414:3:1:12096:1078#0/1 | |
| 22 NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT | |
| 23 + | |
| 24 BEKEEJOHHHTTVVV_____[[Y[[WWVXXXVXXWRRPTTWXXXWWQQWXWWWTWKKLLLLLLHRVTVVNTTVVT_____YWYYY | |
| 25 @SOLEXA2_0414:3:1:12624:1071#0/1 | |
| 26 NTGCGATAGTGTCCTGTGTGCCCCTGCACATGCCTGTGGCTTCCCGGGCTTCTGACCACATCCCCACCATCTTTGTGCCTCCGGA | |
| 27 + | |
| 28 BQLLMTTTTT__________YYYYY________b___________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 29 @SOLEXA2_0414:3:1:13769:1080#0/1 | |
| 30 NAGCAATCTAAAACCCAAAGTATATAAGAAGGGTATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCA | |
| 31 + | |
| 32 BPPPPXXXXX_b_b_b_bbb_b___YYYYYWXXXXWWWWW_b__b_____QQQQQb_b_b_b_bQQZ___b_b____________ | |
| 33 @SOLEXA2_0414:3:1:13956:1081#0/1 | |
| 34 NTGCGATCTCAGTCTCCTGAGTAGCTGGGATCTAGCACTCAGAAATGAGAGATGAAAAGGCTAATTCACAAAGTAGCCAAAAATA | |
| 35 + | |
| 36 BPPPNWWWWW__b__b_bb_____b_b__b__b_bb_bbb______________bb_____b__bbb__bYYYWY________YO | |
| 37 @SOLEXA2_0414:3:1:14801:1076#0/1 | |
| 38 NTGCGATGGACCAGCTGGAAAATTGGTGTTGTCGTCGGTGCAAATTCTGTCACGTTTGTGGAAGGCGACATCAGGCTACAAGGGG | |
| 39 + | |
| 40 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 41 @SOLEXA2_0414:3:1:16010:1079#0/1 | |
| 42 NAGCAATTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGT | |
| 43 + | |
| 44 BKJQQVWVVV_______________WYYYY_______________V____Y[[[[_________________________BBBBB | |
| 45 @SOLEXA2_0414:3:1:17165:1075#0/1 | |
| 46 NTGCGATCTAGGACACTGCGGGAGATTCAGAGTACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCAGAGTAACA | |
| 47 + | |
| 48 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 49 @SOLEXA2_0414:3:1:19504:1081#0/1 | |
| 50 NAGCAATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCACATAATAAGGTGTCAAAAT | |
| 51 + | |
| 52 BJJOJRRQQRYYYYY__b_______[[[[PWWTWWYYYYY[Y[[[YYYYUTTWVVY[YY[_______________VTTTVTVVTV | |
| 53 @SOLEXA2_0414:3:1:19703:1080#0/1 | |
| 54 NAGCAATATTGAATTAAATATATGCCAGTGGACTACTAAAACCCAAAGTATATAAGAAGGGTATGGTTGATTATGTTTTTCTACA | |
| 55 + | |
| 56 BIKOIVWVVVY[Y[YVVTVTYYYYY_W___BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 57 @SOLEXA2_0414:3:1:6962:1084#0/1 | |
| 58 NTGCGATCTGAATCTCCCGCAGTGTCCGGGTGGGGTCAGAAAAATGGGCAGCTCAACTGCAGGTACACGTAGTGCGACCAGTGCC | |
| 59 + | |
| 60 BEMEEKLQJJ__________Y[[[[XXXXXXWQQQQYYYY__QQQ___PWWWXWV_____BBBBBBBBBBBBBBBBBBBBBBBBB | |
| 61 @SOLEXA2_0414:3:1:8715:1091#0/1 | |
| 62 NTGCGATCAACCATTCAGACACCAGCAGAAGTGTTCTGGAATCCTATGTGAGGGACATACATTCAGACCACGGCAGAAGTGTTCT | |
| 63 + | |
| 64 BGKEEHMKHL[[[[[_____Y[[[[_______________W_________YYYYY_______________[[Y[Y[[[Y[[[[[[ | |
| 65 @SOLEXA2_0414:3:1:12077:1083#0/1 | |
| 66 NAGCAATATGCTTTGGCCACAAAATAAGTGCACTGTGCAATATCAAGTGTTTCAGCAAGTTTTTGGAATCTCAAGCACATTTTGA | |
| 67 + | |
| 68 BJJJJQRPPObbb____b__b__QQQQQ_________b_____b_[[[[[______V_____________b____YY[[[b___O | |
| 69 @SOLEXA2_0414:3:1:13392:1083#0/1 | |
| 70 NTGCGATCCGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGTCTGGTTTGTCCTATTTGTGTTTGAATTTGGCTCTACGTG | |
| 71 + | |
| 72 BKJQJORQPP_______________TWTWTWWWTTYYYYY_____YYYYWYYYYYYYYYYWWWWWVVTTV______Y_______B | |
| 73 @SOLEXA2_0414:3:1:14856:1092#0/1 | |
| 74 NTGCGATGTGTCCTTAGGACAAACCAGACCTTACAACTGTAAGCCTGGCTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGA | |
| 75 + | |
| 76 BIIOHTTSTT_____[[[[YYYYYYVYYYY______________W[[[YY__________V[[[[____WXVVXX___W_XXWXV | |
| 77 @SOLEXA2_0414:3:1:17070:1089#0/1 | |
| 78 NTGCGATCTGAATCTCCCGCAGTGTCCCACTCTTAGGTCACTTAGCATGTTCATTAGAGTACTCTGAATCTCCCGCAGTGTCCTC | |
| 79 + | |
| 80 BHMOGRTTTTY[[[Y__________TVVVTYVYYY____WYYYYRPRWRR[[Y[[_____WWWTWWTWWWYYYYY[R[[YYYYYY | |
| 81 @SOLEXA2_0414:3:1:18860:1082#0/1 | |
| 82 NAGCAATACAGTTGTAAGGTCTGGTTTGTCCTCACTCAAATGTCATCTCGAATTGTAGTTCTCATAATGGCCGCATGTTGTGGGA | |
| 83 + | |
| 84 BHOKHSWTTT____________________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 85 @SOLEXA2_0414:3:1:18912:1089#0/1 | |
| 86 NTGCGATCATCTGAGGAGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCA | |
| 87 + | |
| 88 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 89 @SOLEXA2_0414:3:1:3923:1105#0/1 | |
| 90 NAGCAATAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTATTGCTC | |
| 91 + | |
| 92 BNNNQVWVVV__bbb__b_bb____b________b__Z_______[[[[YYYYYY_____b___b | |
| 93 @SOLEXA2_0414:3:1:6494:1099#0/1 | |
| 94 NTGCGATTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTACAGTTGTAAGGTCTGGTTTGTCCTAGGCAGAATCGC | |
| 95 + | |
| 96 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 97 @SOLEXA2_0414:3:1:8413:1097#0/1 | |
| 98 NTGCGATCCATACCCTTCTTATATACTTTGGGTTTTAGTAGTCCACTGGCATATATTTAATTCAATACATACTCATTAAGCAATG | |
| 99 + | |
| 100 BGIGEMQLNQ_______________VXXXX_____WWXXX[YY[[_____WYRYY___________V___YLYYYYYYPY_____ | |
| 101 @SOLEXA2_0414:3:1:9865:1095#0/1 | |
| 102 NCTACATTAATTGTTTTAATTTTTATTTATTTATTTTTTTGAGACGGAGTCTCGCTGATGTAGC | |
| 103 + | |
| 104 BKKJKRTTST_____QQQ_b[[[[[QQQQ_QQQbQQQQQQQ_________bb____________ | |
| 105 @SOLEXA2_0414:3:1:10606:1102#0/1 | |
| 106 NTGCGATATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGTATTTTTGGCTACTTTGTGAAT | |
| 107 + | |
| 108 BMMMMTUTTRTTVWV_____b___b__b_QQQQ__[Y[[YYYYYY_______________[[[[[YYYQQQ____BBBBBBBBBB | |
| 109 @SOLEXA2_0414:3:1:11267:1102#0/1 | |
| 110 NCTACATTACTCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACATGTAGC | |
| 111 + | |
| 112 BEGGEJLHIK______________RTWWWWY[Y[[________________QM__YYYYYXWJVX_____B | |
| 113 @SOLEXA2_0414:3:1:13556:1104#0/1 | |
| 114 NTGCGATTTACAACCGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTATCGCAA | |
| 115 + | |
| 116 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 117 @SOLEXA2_0414:3:1:13625:1097#0/1 | |
| 118 NTGCGATCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTATCGCAA | |
| 119 + | |
| 120 BJKJJTUUST___b_b_____b______________________________bW_bb__bb____[[Y[YYYYY | |
| 121 @SOLEXA2_0414:3:1:14055:1098#0/1 | |
| 122 NAGCAATCTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAA | |
| 123 + | |
| 124 BMMMNWWWWWbbb________bb_______b_^__________bbb_________bb_b__b__b__b_bb____[Y[Y[VQWVV | |
| 125 @SOLEXA2_0414:3:1:14195:1099#0/1 | |
| 126 NTGCGATCTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATATCGCAAAGATC | |
| 127 + | |
| 128 BPPPNVWVWV_b__bbb____bbb__bb__b_______b___bbQQ_b___bb_bb__b____b_b____b_bb___b____b__ | |
| 129 @SOLEXA2_0414:3:1:15892:1106#0/1 | |
| 130 NTGCGATAGACACATGAAGTTCCAAATTATTTTTTAACAATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGA | |
| 131 + | |
| 132 BPOQMVWVVV_bbb_bb_b_b__________QQQQQbbb_b_b___b__b__________b____Z___________b_b____Z | |
| 133 @SOLEXA2_0414:3:1:18397:1101#0/1 | |
| 134 NTGCGATATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCC | |
| 135 + | |
| 136 BHIKHWTRTTYYYYYXXVWWYYYQQOOOWWY[[[[__QQ_WWWTWXXXWW_______________YYYYYXXXXXWWWWWYYYYR | |
| 137 @SOLEXA2_0414:3:1:4546:1111#0/1 | |
| 138 NCTACATCAAAAACATGCGTATGGACAAACCAGACCTTACAACTGTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAAC | |
| 139 + | |
| 140 BOIHKLRNMQXWWWQQ______________________________________________^_____________________Y | |
| 141 @SOLEXA2_0414:3:1:5840:1112#0/1 | |
| 142 NTGCGATCTTAAAAATTGTTAAAAAATAATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGT | |
| 143 + | |
| 144 BQKKJRQONNKRNNL__________QQQQQVVVTTSSRSSQYYYYYYYYYQQQQ______BBBBBBBBBBBBBBBBBBBBBBBBB | |
| 145 @SOLEXA2_0414:3:1:6252:1110#0/1 | |
| 146 NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT | |
| 147 + | |
| 148 BKIKHNRROR_b____b_____________________b___bbb_QQ_______________Q_YYYYY___T________W__ | |
| 149 @SOLEXA2_0414:3:1:6533:1111#0/1 | |
| 150 NCTACATGAGGGCGCTCGTTCTCCTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGA | |
| 151 + | |
| 152 BPPPPWWVVV____bb_bbbbbb_bbb____bQQQQ_b___b_b_____bb_bb____b_bb__b_bbbbb__b___________ | |
| 153 @SOLEXA2_0414:3:1:7569:1113#0/1 | |
| 154 NAGCAATTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGAACATGGGAAGATAGAAG | |
| 155 + | |
| 156 BIKOOPTTTT_____QQQQ_YYYYYYYYYY_____YYYYY___________________________________YQYYY___Y_ | |
| 157 @SOLEXA2_0414:3:1:7605:1117#0/1 | |
| 158 NAGCAATCCTTTAGTTCTAGTGTCTAGGGATATGCAAAGTCAGAAAAAACCAGTCACCACCCAAAAGAAAATAGTGCAGACAAGG | |
| 159 + | |
| 160 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 161 @SOLEXA2_0414:3:1:13482:1108#0/1 | |
| 162 NCTACATCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAATA | |
| 163 + | |
| 164 BLLLQVWWWVbb__bb___b_____b_____bb_b____________QQ_bbb_bY____OTVVOYVYYYVVSTTWWTTWYQQQQ | |
| 165 @SOLEXA2_0414:3:1:14990:1109#0/1 | |
| 166 NTGCGATCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGCCTGGTTTGTCCTGGACACTGCG | |
| 167 + | |
| 168 BIGGJNRPOOYYYYYVWXWV_____YYRPWYYYYYXWWRWYYYYYVVTVTXXVWX_________Y[Y[[[_____YYYYY_____ | |
| 169 @SOLEXA2_0414:3:1:15871:1113#0/1 | |
| 170 NTGCGATATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGATCATGAGGACTCTTATAGGCCATGCTAAGACG | |
| 171 + | |
| 172 BJJOHRTRTT[QQQ[___b____b______[V[[[bbbbb_b___b_b_____________________________________ | |
| 173 @SOLEXA2_0414:3:1:17840:1114#0/1 | |
| 174 NAGCAATCTCTAGATTACTTATCATACCTAATACAATGTAAATAGTTGTTATACTGTATTGTTTAGGAAATAATGACAAGAAAAA | |
| 175 + | |
| 176 BOIIIVWWVV_____Y[[[[[[[W[TWTWRYYYYYY[YYY____R_____BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 177 @SOLEXA2_0414:3:1:18083:1109#0/1 | |
| 178 NAGCAATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT | |
| 179 + | |
| 180 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 181 @SOLEXA2_0414:3:1:3606:1121#0/1 | |
| 182 NTGCGATGCATTAATTGTGTCTTTAAGGGTTAAACAGAGGCTCACAACAGACTTGACAATACACAAACTATAGTAAGAACATGGG | |
| 183 + | |
| 184 BIIKHQTTSS[[[Y[_____YYYYYTWVVV_____b___^_________________________YYYYY_____BBBBBBBBBB | |
| 185 @SOLEXA2_0414:3:1:4029:1119#0/1 | |
| 186 NAGCAATGGGAGAGTGTTGTTTTTGTCACTTGCCCCAGCAGAGCAGGGGTTTTGGAAGGAGAGGTCTTTAATAGCTTTGAAAATT | |
| 187 + | |
| 188 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 189 @SOLEXA2_0414:3:1:10939:1119#0/1 | |
| 190 NCTACATACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTATGTAGC | |
| 191 + | |
| 192 BQKQLVWVWV_____[Y[[[__________BBBBBBBBBBBBBBBBBBBBBBBBBB | |
| 193 @SOLEXA2_0414:3:1:11098:1122#0/1 | |
| 194 NAGCAATGTTGAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTACCAAGTTTTGTACCTTTGTAGC | |
| 195 + | |
| 196 BEMGGQQORMVVVVTWWWWWOVTVVWRWWW_______________[[T[YTVTTV_____BBBBBBBBBBBBBBBBBBBBBBBBB | |
| 197 @SOLEXA2_0414:3:1:12110:1126#0/1 | |
| 198 NTGCGATTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCAGATCGCAA | |
| 199 + | |
| 200 BIIIHQRRRQ[[[[[b__bb_b___YYYYY_____UWWWT[T[[Y__bb_____ |