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diff extract_transcript_to_gene_map_from_trinity.xml @ 2:f6b8155ab12a

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Add test cases
author Jim Johnson <jj@umn.edu>
date Thu, 06 Feb 2014 11:46:40 -0600
parents 1ff2fc8da328
children
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--- a/extract_transcript_to_gene_map_from_trinity.xml	Thu Dec 05 10:54:28 2013 -0600
+++ b/extract_transcript_to_gene_map_from_trinity.xml	Thu Feb 06 11:46:40 2014 -0600
@@ -14,8 +14,14 @@
     <exit_code range="1:"  level="fatal" description="Error Running RSEM" />
   </stdio>
   <outputs>
-    <data format="tabular" name="map_file" label="${sample} gene map file"/>
+    <data format="tabular" name="map_file" label="${tool.name} on ${on_string}: gene map file"/>
   </outputs>
+  <tests>
+    <test>
+      <param name="trinity_fasta_file" value="trinity_assembled_transcripts.fasta" ftype="fasta"/>
+      <output name="map_file" file="trinity_gene_map.tabular"/>
+    </test>
+  </tests>
   <help>