diff rsem.py @ 1:1ff2fc8da328

Updates to rsem_calculate_expression.xml

--- a/rsem.py	Mon Nov 11 13:54:43 2013 -0500
+++ b/rsem.py	Thu Dec 05 10:54:28 2013 -0600
@@ -1,5 +1,5 @@
 """
-SnpEff datatypes
+RSEM datatypes
 """
 import os,os.path,re,sys
 import galaxy.datatypes.data
@@ -8,7 +8,7 @@
 
 class RsemReference( Html ):
     """Class describing an RSEM reference"""
-    MetadataElement( name='reference_name', default='galaxy_generated_bowtie_index', desc='RSEM Reference Name', readonly=True, visible=True, no_value=None )
+    MetadataElement( name='reference_name', default=None, desc='RSEM Reference Name', readonly=True, visible=True, no_value=None )
 
     file_ext = 'rsem_ref'
     is_binary = True
@@ -69,7 +69,6 @@
         extra_files_path/<reference_name>.rev.2.ebwt
         extra_files_path/<reference_name>.rev.1.ebwt
         """
-        log.info( "RSEM reference set_meta %s %s" % (dataset,dataset.extra_files_path))
         pat = '^(.*)\.grp$'
         efp = dataset.extra_files_path
         flist = os.listdir(efp)