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comparison rsem_prepare_reference.xml @ 3:d7d4d662b0e9 default tip

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Add test output assertion in rsem_prepare_reference.xml
author Jim Johnson <jj@umn.edu>
date Fri, 07 Feb 2014 06:54:54 -0600
parents f6b8155ab12a
children
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2:f6b8155ab12a 3:d7d4d662b0e9
95 <test> 95 <test>
96 <param name="ref_type" value="genomic"/> 96 <param name="ref_type" value="genomic"/>
97 <param name="reference_fasta_file" value="ref.fasta" ftype="fasta"/> 97 <param name="reference_fasta_file" value="ref.fasta" ftype="fasta"/>
98 <param name="gtf" value="ref.gtf" ftype="gtf"/> 98 <param name="gtf" value="ref.gtf" ftype="gtf"/>
99 <param name="reference_name" value="ref"/> 99 <param name="reference_name" value="ref"/>
100 <output name="rsem_ref">
101 <assert_contents>
102 <has_text text="ref.grp" />
103 </assert_contents>
104 </output>
100 </test> 105 </test>
101 </tests> 106 </tests>
102 <help> 107 <help>
103 108
104 RSEM HOME PAGE - http://deweylab.biostat.wisc.edu/rsem/ 109 RSEM HOME PAGE - http://deweylab.biostat.wisc.edu/rsem/