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1 #This is a sample file distributed with Galaxy that enables tools
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2 #to use a directory of Bowtie indexed sequences data files. You will
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3 #need to create these data files and then create a bowtie_indices.loc
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4 #file similar to this one (store it in this directory) that points to
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5 #the directories in which those files are stored. The bowtie_indices.loc
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6 #file has this format (longer white space characters are TAB characters):
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7 #
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8 #<unique_build_id> <dbkey> <display_name> <file_base_path>
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9 #
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10 #So, for example, if you had hg18 indexed stored in
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11 #/depot/data2/galaxy/bowtie/hg18/,
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12 #then the bowtie_indices.loc entry would look like this:
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13 #
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14 #hg18 hg18 hg18 /depot/data2/galaxy/bowtie/hg18/hg18
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