Mercurial > repos > jjohnson > rmats
changeset 1:c2689aeefa3a draft default tip
"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/rmats commit 315f6ba609e9545c3a374f7fd471aee50b135ec8-dirty"
| author | jjohnson |
|---|---|
| date | Sat, 23 Jul 2022 19:44:13 +0000 |
| parents | 82fde491fe91 |
| children | |
| files | macros.xml |
| diffstat | 1 files changed, 17 insertions(+), 17 deletions(-) [+] |
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--- a/macros.xml Wed Jun 15 17:31:00 2022 +0000 +++ b/macros.xml Sat Jul 23 19:44:13 2022 +0000 @@ -20,23 +20,23 @@ <version_command>rmats.py --version</version_command> </xml> - <token name="COLNAMES_SUMMARY">EventType,TotalEventsJC,TotalEventsJCEC,SignificantEventsJC,SigEventsJCSample1HigherInclusion,SigEventsJCSample2HigherInclusion,SignificantEventsJCEC,SigEventsJCECSample1HigherInclusion,SigEventsJCECSample2HigherInclusion</token> - <token name="SHAREDCOLS">ID,GeneID,geneSymbol,chr,strand</token> - <token name="MXECOLS">1stExonStart_0base,1stExonEnd,2ndExonStart_0base,2ndExonEnd,upstreamES,upstreamEE,downstreamES,downstreamEE</token> - <token name="SECOLS">exonStart_0base,exonEnd,upstreamES,upstreamEE,downstreamES,downstreamEE</token> - <token name="ACOLS">longExonStart_0base,longExonEnd,shortES,shortEE,flankingES,flankingEE</token> - <token name="RICOLS">riExonStart_0base,riExonEnd,upstreamES,upstreamEE,downstreamES,downstreamEE</token> - <token name="CNTCOLS">ID,IJC_SAMPLE_1,SJC_SAMPLE_1,IJC_SAMPLE_2,SJC_SAMPLE_2,IncFormLen,SkipFormLen</token> - <token name="STATCOLS">PValue,FDR,IncLevel1,IncLevel2,IncLevelDifference</token> - <token name="SAMPLECOLS">@CNTCOLS@,@STATCOLS@</token> - <token name="COLNAMES_MXE_GTF">@SHAREDCOLS@,@MXECOLS@</token> - <token name="COLNAMES_MXE">@SHAREDCOLS@,@MXECOLS@,@SAMPLECOLS@</token> - <token name="COLNAMES_SE_GTF">@SHAREDCOLS@,@SECOLS@</token> - <token name="COLNAMES_SE">@SHAREDCOLS@,@SECOLS@,@SAMPLECOLS@</token> - <token name="COLNAMES_A_SS_GTF">@SHAREDCOLS@,@ACOLS@</token> - <token name="COLNAMES_A_SS">@SHAREDCOLS@,@ACOLS@,@SAMPLECOLS@</token> - <token name="COLNAMES_RI_GTF">@SHAREDCOLS@,@RICOLS@</token> - <token name="COLNAMES_RI">@SHAREDCOLS@,@RICOLS@,@SAMPLECOLS@</token> + <token name="@COLNAMES_SUMMARY@">EventType,TotalEventsJC,TotalEventsJCEC,SignificantEventsJC,SigEventsJCSample1HigherInclusion,SigEventsJCSample2HigherInclusion,SignificantEventsJCEC,SigEventsJCECSample1HigherInclusion,SigEventsJCECSample2HigherInclusion</token> + <token name="@SHAREDCOLS@">ID,GeneID,geneSymbol,chr,strand</token> + <token name="@MXECOLS@">1stExonStart_0base,1stExonEnd,2ndExonStart_0base,2ndExonEnd,upstreamES,upstreamEE,downstreamES,downstreamEE</token> + <token name="@SECOLS@">exonStart_0base,exonEnd,upstreamES,upstreamEE,downstreamES,downstreamEE</token> + <token name="@ACOLS@">longExonStart_0base,longExonEnd,shortES,shortEE,flankingES,flankingEE</token> + <token name="@RICOLS@">riExonStart_0base,riExonEnd,upstreamES,upstreamEE,downstreamES,downstreamEE</token> + <token name="@CNTCOLS@">ID,IJC_SAMPLE_1,SJC_SAMPLE_1,IJC_SAMPLE_2,SJC_SAMPLE_2,IncFormLen,SkipFormLen</token> + <token name="@STATCOLS@">PValue,FDR,IncLevel1,IncLevel2,IncLevelDifference</token> + <token name="@SAMPLECOLS@">@CNTCOLS@,@STATCOLS@</token> + <token name="@COLNAMES_MXE_GTF@">@SHAREDCOLS@,@MXECOLS@</token> + <token name="@COLNAMES_MXE@">@SHAREDCOLS@,@MXECOLS@,@SAMPLECOLS@</token> + <token name="@COLNAMES_SE_GTF@">@SHAREDCOLS@,@SECOLS@</token> + <token name="@COLNAMES_SE@">@SHAREDCOLS@,@SECOLS@,@SAMPLECOLS@</token> + <token name="@COLNAMES_A_SS_GTF@">@SHAREDCOLS@,@ACOLS@</token> + <token name="@COLNAMES_A_SS@">@SHAREDCOLS@,@ACOLS@,@SAMPLECOLS@</token> + <token name="@COLNAMES_RI_GTF@">@SHAREDCOLS@,@RICOLS@</token> + <token name="@COLNAMES_RI@">@SHAREDCOLS@,@RICOLS@,@SAMPLECOLS@</token> <xml name="output_actions" token_column_names="@COLNAME_SUMMARY@"> <actions>