query_tabular: query_tabular.xml annotate

annotate query_tabular.xml @ 4:afdbc7198353 draft

planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty

author	jjohnson
date	Thu, 21 Jan 2016 08:09:36 -0500
parents	ffa5e34a55c1
children	727620f718c2

rev	line source
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	1 <tool id="query_tabular" name="Query Tabular" version="0.1.0">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	2 <description>using sqlite sql</description>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	3
763c4f968dc6 Uploaded jjohnson parents: diff changeset	4 <requirements>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	5 </requirements>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	6 <stdio>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	7 <exit_code range="1:" />
763c4f968dc6 Uploaded jjohnson parents: diff changeset	8 </stdio>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	9 <command interpreter="python"><![CDATA[
763c4f968dc6 Uploaded jjohnson parents: diff changeset	10 query_tabular.py
763c4f968dc6 Uploaded jjohnson parents: diff changeset	11 #if $save_db
763c4f968dc6 Uploaded jjohnson parents: diff changeset	12 -s $sqlitedb
763c4f968dc6 Uploaded jjohnson parents: diff changeset	13 #else
763c4f968dc6 Uploaded jjohnson parents: diff changeset	14 -s $workdb
763c4f968dc6 Uploaded jjohnson parents: diff changeset	15 #end if
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	16 -j $table_json
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	17 #*
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	18 ## #for $i,$tbl in enumerate($tables):
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	19 ## #if $tbl.table_name
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	20 ## #set $tname = $tbl.table_name
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	21 ## #else
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	22 ## #set $tname = 't' + str($i + 1)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	23 ## #end if
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	24 ## #if $tbl.col_names:
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	25 ## #set $col_names = ':' + str($tbl.col_names)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	26 ## #else
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	27 ## #set $col_names = ''
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	28 ## #end if
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	29 ## -t ${tbl.table}=${tname}${$col_names}
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	30 ## #end for
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	31 *#
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	32 #if $sqlquery:
ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	33 -Q "$query_file"
1 24f0911f75ee Uploaded jjohnson parents: 0 diff changeset	34 $no_header
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	35 -o $output
763c4f968dc6 Uploaded jjohnson parents: diff changeset	36 #end if
763c4f968dc6 Uploaded jjohnson parents: diff changeset	37 ]]></command>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	38 <configfiles>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	39 <configfile name="query_file">
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	40 $sqlquery
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	41 </configfile>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	42 <configfile name="table_json">
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	43 #import json
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	44 #set $jtbldef = dict()
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	45 #set $jtbls = []
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	46 #set $jtbldef['tables'] = $jtbls
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	47 #for $i,$tbl in enumerate($tables):
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	48 #set $jtbl = dict()
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	49 #set $jtbl['file_path'] = str($tbl.table)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	50 #if $tbl.table_name
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	51 #set $tname = str($tbl.table_name)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	52 #else
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	53 #set $tname = 't' + str($i + 1)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	54 #end if
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	55 #set $jtbl['table_name'] = $tname
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	56 #if $tbl.col_names:
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	57 #set $col_names = str($tbl.col_names)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	58 #else
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	59 #set $col_names = ''
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	60 #end if
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	61 #set $jtbl['column_names'] = $col_names
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	62 #if str($tbl.skip_lines) != '':
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	63 #set $jtbl['comment_lines'] = $tbl.skip_lines
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	64 #elif $tbl.table.metadata.comment_lines > 0:
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	65 #set $jtbl['comment_lines'] = int($tbl.table.metadata.comment_lines)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	66 #end if
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	67 #set $jtbls += [$jtbl]
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	68 #end for
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	69 #echo $json.dumps($jtbldef)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	70 </configfile>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	71 </configfiles>
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	72 <inputs>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	73 <param name="workdb" type="hidden" value="workdb.sqlite" label=""/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	74 <repeat name="tables" title="Add tables" min="1">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	75 <param name="table" type="data" format="tabular" label="Dataset"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	76 <param name="table_name" type="text" value="" optional="true" label="Table name">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	77 <help>By default, tables will be named: t1,t2,...,tn</help>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	78 <validator type="regex" message="Table name should start with a letter and may contain additional letters, digits, and underscores">^[A-Za-z]\w*$</validator>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	79 </param>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	80 <!--
763c4f968dc6 Uploaded jjohnson parents: diff changeset	81 <param name="sel_cols" label="Include columns" type="data_column" multiple="true" data_ref="table" />
763c4f968dc6 Uploaded jjohnson parents: diff changeset	82 -->
763c4f968dc6 Uploaded jjohnson parents: diff changeset	83 <param name="col_names" type="text" value="" optional="true" label="Column names">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	84 <help>By default, table columns will be named: c1,c2,c3,...,cn</help>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	85 <validator type="regex" message="A List of separated by commas: Column names should start with a letter and may contain additional letters, digits, and underscores">^([A-Za-z]\w)?(,([A-Za-z]\w)?)*$</validator>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	86 </param>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	87 <param name="skip_lines" type="integer" value="" min="0" optional="true" label="Skip lines" help="Leave blank to use the datatype comment lines metadata" />
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	88 </repeat>
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	89 <param name="sqlquery" type="text" area="true" size="10x80" value="" optional="true" label="SQL Query">
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	90 <help>By default, tables will be named: t1,t2,...,tn</help>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	91 <sanitizer sanitize="False"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	92 <validator type="regex" message="">^(?i)\sselect\s+.\s+from\s+.*$</validator>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	93 </param>
1 24f0911f75ee Uploaded jjohnson parents: 0 diff changeset	94 <param name="no_header" type="boolean" truevalue="-n" falsevalue="" checked="False" label="Omit column headers"/>
24f0911f75ee Uploaded jjohnson parents: 0 diff changeset	95
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	96 <param name="save_db" type="boolean" truevalue="yes" falsevalue="no" checked="false" label="Save the sqlite database"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	97 </inputs>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	98 <outputs>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	99 <data format="sqlite" name="sqlitedb" label="sqlite db of ${on_string}">
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	100 <filter>save_db or not (sqlquery and len(sqlquery) > 0)</filter>
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	101 </data>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	102 <data format="tabular" name="output" label="query results on ${on_string}">
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	103 <filter>sqlquery and len(sqlquery) > 0</filter>
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	104 </data>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	105 </outputs>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	106 <tests>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	107
763c4f968dc6 Uploaded jjohnson parents: diff changeset	108 <test>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	109 <repeat name="tables">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	110 <param name="table" ftype="tabular" value="customers.tsv"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	111 <param name="table_name" value="customers"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	112 <param name="col_names" value="CustomerID,FirstName,LastName,Email,DOB,Phone"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	113 </repeat>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	114 <repeat name="tables">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	115 <param name="table" ftype="tabular" value="sales.tsv"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	116 <param name="table_name" value="sales"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	117 <param name="col_names" value="CustomerID,Date,SaleAmount"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	118 </repeat>
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	119 <param name="sqlquery" value="SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales" FROM customers join sales on customers.CustomerID = sales.CustomerID GROUP BY customers.CustomerID ORDER BY TotalSales DESC"/>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	120 <output name="output" file="sales_results.tsv"/>
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	121 </test>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	122
763c4f968dc6 Uploaded jjohnson parents: diff changeset	123 <test>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	124 <repeat name="tables">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	125 <param name="table" ftype="tabular" value="customers.tsv"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	126 <param name="col_names" value=",FirstName,LastName,,DOB,"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	127 </repeat>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	128 <repeat name="tables">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	129 <param name="table" ftype="tabular" value="sales.tsv"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	130 </repeat>
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	131 <param name="sqlquery" value="SELECT FirstName,LastName,sum(t2.c3) as "TotalSales" FROM t1 join t2 on t1.c1 = t2.c1 GROUP BY t1.c1 ORDER BY TotalSales DESC;"/>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	132 <output name="output" file="sales_results.tsv"/>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	133 </test>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	134
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	135 <test>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	136 <repeat name="tables">
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	137 <param name="table" ftype="tabular" value="customers.tsv"/>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	138 <param name="col_names" value=",FirstName,LastName,,BirthDate,"/>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	139 </repeat>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	140 <param name="sqlquery" value="select FirstName,LastName,re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB" from t1 WHERE re_search('[hp]er',c4)"/>
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	141 <output name="output" file="regex_results.tsv"/>
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	142 </test>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	143
763c4f968dc6 Uploaded jjohnson parents: diff changeset	144 <test>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	145 <repeat name="tables">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	146 <param name="table" ftype="tabular" value="IEDB.tsv"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	147 <param name="table_name" value="iedb"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	148 <param name="col_names" value="ID,allele,seq_num,start,end,length,peptide,method,percentile_rank,ann_ic50,ann_rank,smm_ic50,smm_rank,comblib_sidney2008_score,comblib_sidney2008_rank,netmhcpan_ic50,netmhcpan_rank"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	149 </repeat>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	150 <repeat name="tables">
763c4f968dc6 Uploaded jjohnson parents: diff changeset	151 <param name="table" ftype="tabular" value="netMHC_summary.tsv"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	152 <param name="table_name" value="mhc_summary"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	153 <param name="col_names" value="pos,peptide,logscore,affinity,Bind_Level,Protein,Allele"/>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	154 </repeat>
2 ffa5e34a55c1 Uploaded jjohnson parents: 1 diff changeset	155 <param name="sqlquery" value="select iedb.ID,iedb.peptide,iedb.start,iedb.end,iedb.percentile_rank,mhc_summary.logscore,mhc_summary.affinity,mhc_summary.Bind_Level from iedb left outer join mhc_summary on iedb.peptide = mhc_summary.peptide order by affinity,Bind_Level"/>
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	156 <output name="output" file="query_results.tsv"/>
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	157 </test>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	158
763c4f968dc6 Uploaded jjohnson parents: diff changeset	159 </tests>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	160 <help><![CDATA[
763c4f968dc6 Uploaded jjohnson parents: diff changeset	161 =============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	162 Query Tabular
763c4f968dc6 Uploaded jjohnson parents: diff changeset	163 =============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	164
763c4f968dc6 Uploaded jjohnson parents: diff changeset	165 Inputs
763c4f968dc6 Uploaded jjohnson parents: diff changeset	166
763c4f968dc6 Uploaded jjohnson parents: diff changeset	167 Loads tabular datasets into a SQLite_ data base.
763c4f968dc6 Uploaded jjohnson parents: diff changeset	168
763c4f968dc6 Uploaded jjohnson parents: diff changeset	169 Outputs
763c4f968dc6 Uploaded jjohnson parents: diff changeset	170
763c4f968dc6 Uploaded jjohnson parents: diff changeset	171 The results of a SQL query are output to the history as a tabular file.
763c4f968dc6 Uploaded jjohnson parents: diff changeset	172
763c4f968dc6 Uploaded jjohnson parents: diff changeset	173 The SQLite_ data base can also be saved and output as a dataset in the history.
763c4f968dc6 Uploaded jjohnson parents: diff changeset	174
763c4f968dc6 Uploaded jjohnson parents: diff changeset	175
763c4f968dc6 Uploaded jjohnson parents: diff changeset	176 For help in using SQLite_ see: http://www.sqlite.org/docs.html
763c4f968dc6 Uploaded jjohnson parents: diff changeset	177
763c4f968dc6 Uploaded jjohnson parents: diff changeset	178 NOTE: input for SQLite dates input field must be in the format: YYYY-MM-DD for example: 2015-09-30
763c4f968dc6 Uploaded jjohnson parents: diff changeset	179
763c4f968dc6 Uploaded jjohnson parents: diff changeset	180 See: http://www.sqlite.org/lang_datefunc.html
763c4f968dc6 Uploaded jjohnson parents: diff changeset	181
763c4f968dc6 Uploaded jjohnson parents: diff changeset	182 Example
763c4f968dc6 Uploaded jjohnson parents: diff changeset	183
763c4f968dc6 Uploaded jjohnson parents: diff changeset	184 Given 2 tabular datasets: customers and sales
763c4f968dc6 Uploaded jjohnson parents: diff changeset	185
763c4f968dc6 Uploaded jjohnson parents: diff changeset	186 Dataset customers
763c4f968dc6 Uploaded jjohnson parents: diff changeset	187
763c4f968dc6 Uploaded jjohnson parents: diff changeset	188 Table name: "customers"
763c4f968dc6 Uploaded jjohnson parents: diff changeset	189
763c4f968dc6 Uploaded jjohnson parents: diff changeset	190 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone"
763c4f968dc6 Uploaded jjohnson parents: diff changeset	191
763c4f968dc6 Uploaded jjohnson parents: diff changeset	192 =========== ========== ========== ===================== ========== ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	193 #CustomerID FirstName LastName Email DOB Phone
763c4f968dc6 Uploaded jjohnson parents: diff changeset	194 =========== ========== ========== ===================== ========== ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	195 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
763c4f968dc6 Uploaded jjohnson parents: diff changeset	196 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
763c4f968dc6 Uploaded jjohnson parents: diff changeset	197 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
763c4f968dc6 Uploaded jjohnson parents: diff changeset	198 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
763c4f968dc6 Uploaded jjohnson parents: diff changeset	199 =========== ========== ========== ===================== ========== ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	200
763c4f968dc6 Uploaded jjohnson parents: diff changeset	201 Dataset sales
763c4f968dc6 Uploaded jjohnson parents: diff changeset	202
763c4f968dc6 Uploaded jjohnson parents: diff changeset	203 Table name: "sales"
763c4f968dc6 Uploaded jjohnson parents: diff changeset	204
763c4f968dc6 Uploaded jjohnson parents: diff changeset	205 Column names: "CustomerID,Date,SaleAmount"
763c4f968dc6 Uploaded jjohnson parents: diff changeset	206
763c4f968dc6 Uploaded jjohnson parents: diff changeset	207 ============= ============ ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	208 #CustomerID Date SaleAmount
763c4f968dc6 Uploaded jjohnson parents: diff changeset	209 ============= ============ ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	210 2 2004-05-06 100.22
763c4f968dc6 Uploaded jjohnson parents: diff changeset	211 1 2004-05-07 99.95
763c4f968dc6 Uploaded jjohnson parents: diff changeset	212 3 2004-05-07 122.95
763c4f968dc6 Uploaded jjohnson parents: diff changeset	213 3 2004-05-13 100.00
763c4f968dc6 Uploaded jjohnson parents: diff changeset	214 4 2004-05-22 555.55
763c4f968dc6 Uploaded jjohnson parents: diff changeset	215 ============= ============ ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	216
763c4f968dc6 Uploaded jjohnson parents: diff changeset	217 The query
763c4f968dc6 Uploaded jjohnson parents: diff changeset	218
763c4f968dc6 Uploaded jjohnson parents: diff changeset	219 ::
763c4f968dc6 Uploaded jjohnson parents: diff changeset	220
763c4f968dc6 Uploaded jjohnson parents: diff changeset	221 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales"
763c4f968dc6 Uploaded jjohnson parents: diff changeset	222 FROM customers join sales on customers.CustomerID = sales.CustomerID
763c4f968dc6 Uploaded jjohnson parents: diff changeset	223 GROUP BY customers.CustomerID ORDER BY TotalSales DESC;
763c4f968dc6 Uploaded jjohnson parents: diff changeset	224
763c4f968dc6 Uploaded jjohnson parents: diff changeset	225 Produces this tabular output:
763c4f968dc6 Uploaded jjohnson parents: diff changeset	226
763c4f968dc6 Uploaded jjohnson parents: diff changeset	227 ========== ======== ==========
763c4f968dc6 Uploaded jjohnson parents: diff changeset	228 #FirstName LastName TotalSales
763c4f968dc6 Uploaded jjohnson parents: diff changeset	229 ========== ======== ==========
763c4f968dc6 Uploaded jjohnson parents: diff changeset	230 James Smith 555.55
763c4f968dc6 Uploaded jjohnson parents: diff changeset	231 Paula Brown 222.95
763c4f968dc6 Uploaded jjohnson parents: diff changeset	232 Steven Goldfish 100.22
763c4f968dc6 Uploaded jjohnson parents: diff changeset	233 John Smith 99.95
763c4f968dc6 Uploaded jjohnson parents: diff changeset	234 ========== ======== ==========
763c4f968dc6 Uploaded jjohnson parents: diff changeset	235
763c4f968dc6 Uploaded jjohnson parents: diff changeset	236
763c4f968dc6 Uploaded jjohnson parents: diff changeset	237 If the optional Table name and Column names inputs are not used, the query would be:
763c4f968dc6 Uploaded jjohnson parents: diff changeset	238
763c4f968dc6 Uploaded jjohnson parents: diff changeset	239 ::
763c4f968dc6 Uploaded jjohnson parents: diff changeset	240
763c4f968dc6 Uploaded jjohnson parents: diff changeset	241 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales"
763c4f968dc6 Uploaded jjohnson parents: diff changeset	242 FROM t1 join t2 on t1.c1 = t2.c1
763c4f968dc6 Uploaded jjohnson parents: diff changeset	243 GROUP BY t1.c1 ORDER BY TotalSales DESC;
763c4f968dc6 Uploaded jjohnson parents: diff changeset	244
763c4f968dc6 Uploaded jjohnson parents: diff changeset	245 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5:
763c4f968dc6 Uploaded jjohnson parents: diff changeset	246
763c4f968dc6 Uploaded jjohnson parents: diff changeset	247 Column names: ,FirstName,LastName,,BirthDate
763c4f968dc6 Uploaded jjohnson parents: diff changeset	248
763c4f968dc6 Uploaded jjohnson parents: diff changeset	249 Results in the following data base table
763c4f968dc6 Uploaded jjohnson parents: diff changeset	250
763c4f968dc6 Uploaded jjohnson parents: diff changeset	251 =========== ========== ========== ===================== ========== ============
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	252 #c1 FirstName LastName c4 BirthDate c6
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	253 =========== ========== ========== ===================== ========== ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	254 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
763c4f968dc6 Uploaded jjohnson parents: diff changeset	255 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
763c4f968dc6 Uploaded jjohnson parents: diff changeset	256 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
763c4f968dc6 Uploaded jjohnson parents: diff changeset	257 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
763c4f968dc6 Uploaded jjohnson parents: diff changeset	258 =========== ========== ========== ===================== ========== ============
763c4f968dc6 Uploaded jjohnson parents: diff changeset	259
4 afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	260 Regular_expression_ functions are included for:
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	261
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	262 ::
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	263
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	264 matching: re_match('pattern',column)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	265
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	266 SELECT t1.FirstName, t1.LastName
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	267 FROM t1
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	268 WHERE re_match('^.*\.(net\|org)$',c4)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	269
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	270 Results:
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	271
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	272 =========== ==========
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	273 #FirstName LastName
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	274 =========== ==========
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	275 Steven Goldfish
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	276 Paula Brown
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	277 =========== ==========
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	278
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	279
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	280 ::
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	281
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	282 searching: re_search('pattern',column)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	283 substituting: re_sub('pattern','replacement,column)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	284
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	285 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB"
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	286 FROM t1
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	287 WHERE re_search('[hp]er',c4)
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	288
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	289 Results:
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	290
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	291 =========== ========== ==========
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	292 #FirstName LastName DOB
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	293 =========== ========== ==========
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	294 Steven Goldfish 04/04/74
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	295 Paula Brown 24/05/78
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	296 James Smith 20/10/80
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	297 =========== ========== ==========
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	298
afdbc7198353 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/query_tabular commit 9ae87502ea7c3da33ecc453872c4eb2f41ecea4a-dirty jjohnson parents: 2 diff changeset	299 .. _Regular_expression: https://docs.python.org/release/2.7/library/re.html
0 763c4f968dc6 Uploaded jjohnson parents: diff changeset	300 .. _SQLite: http://www.sqlite.org/index.html
763c4f968dc6 Uploaded jjohnson parents: diff changeset	301
763c4f968dc6 Uploaded jjohnson parents: diff changeset	302 ]]></help>
763c4f968dc6 Uploaded jjohnson parents: diff changeset	303 </tool>

Mercurial > repos > jjohnson > query_tabular

annotate query_tabular.xml @ 4:afdbc7198353 draft