view macros_basic.xml @ 1:fa76abf69433 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit e09348a0c372d4355c5dda6519e52ff17e0e8621-dirty

<macros>
    <xml name="stdio">
        <stdio>
            <exit_code range="1:" level="fatal" description="Job Failed" />
            <regex match="java.*Exception" level="fatal" description="Java Exception"/>
            <regex match="Could not reserve enough space for * object heap" level="fatal" description="Out of memory"/>
            <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/>
            <regex match="CompomicsError" level="fatal" description="Compomics Error"/>
        </stdio>
    </xml>
    <token name="@SEARCHGUI_MAJOR_VERSION@">3</token>
    <token name="@SEARCHGUI_VERSION@">3.3.1</token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1186/1471-2105-12-70</citation>
            <citation type="doi">10.1002/pmic.201000595</citation>
            <citation type="doi">doi:10.1038/nbt.3109</citation>
        </citations>
    </xml>
</macros>