Mercurial > repos > jjohnson > package_shear_0_2_5
changeset 0:8c3f8debdb51 draft default tip
Uploaded
author | jjohnson |
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date | Fri, 08 Nov 2013 10:18:08 -0500 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Nov 08 10:18:08 2013 -0500 @@ -0,0 +1,24 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="shear" version="0.2.5"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.5-compiled.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> +SHEAR: Sample Heterogeneity Estimation and Assembly by Reference + +SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency. + +http://vk.cs.umn.edu/SHEAR/ + </readme> + </package> +</tool_dependency>