Mercurial > repos > jjohnson > package_shear_0_2_4

view tool_dependencies.xml @ 0:d6a7b8497a7b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jjohnson
date Tue, 22 Oct 2013 09:12:32 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="shear" version="0.2.4">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.4-compiled.tar.gz</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
SHEAR: Sample Heterogeneity Estimation and Assembly by Reference

SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.

http://vk.cs.umn.edu/SHEAR/
        </readme>
    </package>
</tool_dependency>