# HG changeset patch
# User jjohnson
# Date 1382014562 14400
# Node ID 8bcf811b9c1edb047b319617c68946000a2f06b4

Uploaded

diff -r 000000000000 -r 8bcf811b9c1e tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 17 08:56:02 2013 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="shear" version="0.2.3">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.3-compiled.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+SHEAR: Sample Heterogeneity Estimation and Assembly by Reference
+
+SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.
+
+http://vk.cs.umn.edu/SHEAR/
+        </readme>
+    </package>
+</tool_dependency>