Mercurial > repos > jjohnson > package_kent
changeset 1:822c8d19cfe3 default tip
Download binary executables if avaiablable, otherwise compile from src
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 06 Nov 2013 14:17:36 -0600 |
| parents | b05b788e3989 |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 468 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Thu Jun 06 08:25:46 2013 -0400 +++ b/tool_dependencies.xml Wed Nov 06 14:17:36 2013 -0600 @@ -2,6 +2,469 @@ <tool_dependency> <package name="kent" version="latest"> <install version="1.0"> + <actions_group> + + <actions os="linux" architecture="x86_64"> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/gfServer</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/gfClient</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/addCols</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ameme</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoDtd</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoSql</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoXml</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ave</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/aveCols</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtChain</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtSwap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtToMaf</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedClip</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedCommonRegions</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedCoverage</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedExtendRanges</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGeneParts</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedIntersect</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedItemOverlapCount</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedPileUps</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedRemoveOverlap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedRestrictToPositions</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToExons</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToGenePred</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedWeedOverlapping</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedInfo</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedNamedItems</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedSummary</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigAverageOverBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigCorrelate</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigInfo</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigMerge</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigSummary</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blastToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blastXmlToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/calc</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/catDir</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/catUncomment</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainAntiRepeat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainMergeSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainNet</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainPreNet</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainStitchId</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSwap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkAgpAndFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkCoverageGaps</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkHgFindSpec</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkTableCoords</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chopFaLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chromGraphFromBin</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chromGraphToBin</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/colTransform</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/countChars</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/crTreeIndexBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/crTreeSearchBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/dbSnoop</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/dbTrash</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/estOrient</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faCmp</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faCount</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFilterN</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFrag</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faNoise</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faOneRecord</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faPolyASizes</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faRandomize</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faRc</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSize</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSomeRecords</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToFastq</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTab</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faTrans</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fastqToFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/featureBits</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/findMotif</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gapToLift</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredHisto</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredSingleCover</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToFakePsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToGtf</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToMafFrames</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToGenePred</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gmtime</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGenePred</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/headRest</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgFindSpec</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgGcPercent</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadOut</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadWiggle</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgTrackDb</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgWiggle</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgsql</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgsqldump</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/htmlCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hubCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ixIxx</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/lavToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/lavToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ldHgGene</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOverMerge</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftUp</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/linesToRa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/localtime</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafAddIRows</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafAddQRows</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafCoverage</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFetch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFrag</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFrags</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafGene</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafMeFirst</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafOrder</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafRanges</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSpeciesList</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSpeciesSubset</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSplitPos</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafsInRegion</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/makeTableList</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/maskOutFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mktime</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mrnaToGene</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netChainSubset</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netClass</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netSyntenic</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/newProg</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/nibFrag</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/nibSize</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/oligoMatch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/overlapSelect</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/paraFetch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/paraSync</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/positionalTblCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCDnaFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslDropOverlap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslHisto</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslLiftSubrangeBlat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslMap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslMrnaCover</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPairs</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPartition</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPretty</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslRecalcMatch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslReps</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSelect</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslStats</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSwap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToChain</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToPslx</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslxToFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qaToQac</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacAgpLift</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacToQa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacToWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raSqlQuery</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raToLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raToTab</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/randomLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/rmFaDups</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/rowsToCols</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/sizeof</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/spacedToTab</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/splitFile</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/splitFileByColumn</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/sqlToXml</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/stringify</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/subChar</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/subColumn</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tailLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tdbQuery</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/textHistogram</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tickToDate</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/toLower</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/toUpper</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/trfBig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitDup</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitInfo</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitMask</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/validateFiles</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/validateManifest</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigCorrelate</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigEncode</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wordLine</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/xmlCat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/xmlToSql</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + + <actions os="darwin" architecture="x86_64"> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/addCols</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ameme</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoDtd</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoSql</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoXml</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ave</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/aveCols</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtChain</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtSwap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtToMaf</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedClip</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedCommonRegions</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedCoverage</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedExtendRanges</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGeneParts</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedIntersect</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedItemOverlapCount</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedPileUps</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedRemoveOverlap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedRestrictToPositions</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToBigBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToExons</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToGenePred</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedWeedOverlapping</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedInfo</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedNamedItems</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedSummary</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigAverageOverBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigCorrelate</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigInfo</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigMerge</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigSummary</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToBedGraph</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blastToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blastXmlToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/calc</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/catDir</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/catUncomment</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainAntiRepeat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainMergeSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainNet</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainPreNet</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainStitchId</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSwap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkAgpAndFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkCoverageGaps</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkHgFindSpec</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkTableCoords</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chopFaLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chromGraphFromBin</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chromGraphToBin</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/colTransform</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/countChars</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/crTreeIndexBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/crTreeSearchBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/dbSnoop</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/dbTrash</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/estOrient</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faCmp</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faCount</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFilterN</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFrag</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faNoise</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faOneRecord</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faPolyASizes</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faRandomize</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faRc</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSize</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSomeRecords</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToFastq</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTab</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTwoBit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faTrans</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/fastqToFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/featureBits</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/fetchChromSizes</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/findMotif</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gapToLift</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredHisto</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredSingleCover</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToFakePsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToGtf</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToMafFrames</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gfClient</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gfServer</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gff3ToGenePred</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gff3ToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gmtime</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gtfToGenePred</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/headRest</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgFindSpec</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgGcPercent</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadOut</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadWiggle</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgTrackDb</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgWiggle</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgsql</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgsqldump</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/htmlCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hubCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ixIxx</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/lavToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/lavToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ldHgGene</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOverMerge</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftUp</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/linesToRa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/localtime</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafAddIRows</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafAddQRows</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafCoverage</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFetch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFrag</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFrags</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafGene</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafMeFirst</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafOrder</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafRanges</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSpeciesList</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSpeciesSubset</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSplitPos</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafToPsl</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafsInRegion</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/makeTableList</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/maskOutFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mktime</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mrnaToGene</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netChainSubset</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netClass</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netSplit</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netSyntenic</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netToAxt</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/newProg</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/nibFrag</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/nibSize</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/oligoMatch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/overlapSelect</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/paraFetch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/paraSync</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/positionalTblCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCDnaFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCheck</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslDropOverlap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslFilter</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslHisto</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslLiftSubrangeBlat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslMap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslMrnaCover</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPairs</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPartition</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPretty</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslRecalcMatch</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslReps</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSelect</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSort</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslStats</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSwap</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToBed</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToChain</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToPslx</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslxToFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qaToQac</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacAgpLift</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacToQa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacToWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raSqlQuery</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raToLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raToTab</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/randomLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/rmFaDups</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/rowsToCols</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/sizeof</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/spacedToTab</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/splitFile</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/splitFileByColumn</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/sqlToXml</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/stringify</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/subChar</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/subColumn</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tailLines</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tdbQuery</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/textHistogram</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tickToDate</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/toLower</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/toUpper</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/trfBig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitDup</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitInfo</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitMask</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/validateFiles</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/validateManifest</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigCorrelate</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigEncode</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigToBigWig</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wordLine</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/xmlCat</action> + <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/xmlToSql</action> + <action type="shell_command">chmod ugo+x *</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + </actions> + <actions> <action type="download_by_url" target_filename="kent.zip">http://hgdownload.cse.ucsc.edu/admin/jksrc.zip</action> <action type="shell_command"> @@ -14,16 +477,17 @@ cd ../gfServer; make; cd ../utils; mv makefile makefile.orig; grep -v -E 'pslLiftSubrangeBlat|raSqlQuery|scaffoldFaToAgp' makefile.orig > makefile; make </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> - </actions> + </actions_group> </install> <readme> Downloads and installs the latest kent tools from UCSC at: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip ( The website doesn't offer previously released versions.) -NOTE: This only handles blat for a NON-COMMERCIAL system. +NOTE: A license is required for use in a COMMERCIAL system. Blat source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the Kent Informatics website (http://www.kentinformatics.com/).