Mercurial > repos > jjohnson > package_kent
comparison tool_dependencies.xml @ 1:822c8d19cfe3 default tip
Download binary executables if avaiablable, otherwise compile from src
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 06 Nov 2013 14:17:36 -0600 |
| parents | b05b788e3989 |
| children |
comparison
equal
deleted
inserted
replaced
| 0:b05b788e3989 | 1:822c8d19cfe3 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="kent" version="latest"> | 3 <package name="kent" version="latest"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions_group> | |
| 6 | |
| 7 <actions os="linux" architecture="x86_64"> | |
| 8 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action> | |
| 9 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/gfServer</action> | |
| 10 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/gfClient</action> | |
| 11 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/addCols</action> | |
| 12 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ameme</action> | |
| 13 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoDtd</action> | |
| 14 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoSql</action> | |
| 15 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoXml</action> | |
| 16 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ave</action> | |
| 17 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/aveCols</action> | |
| 18 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtChain</action> | |
| 19 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtSort</action> | |
| 20 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtSwap</action> | |
| 21 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtToMaf</action> | |
| 22 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtToPsl</action> | |
| 23 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedClip</action> | |
| 24 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedCommonRegions</action> | |
| 25 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedCoverage</action> | |
| 26 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedExtendRanges</action> | |
| 27 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGeneParts</action> | |
| 28 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</action> | |
| 29 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedIntersect</action> | |
| 30 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedItemOverlapCount</action> | |
| 31 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedPileUps</action> | |
| 32 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedRemoveOverlap</action> | |
| 33 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedRestrictToPositions</action> | |
| 34 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedSort</action> | |
| 35 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed</action> | |
| 36 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToExons</action> | |
| 37 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToGenePred</action> | |
| 38 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToPsl</action> | |
| 39 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedWeedOverlapping</action> | |
| 40 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedInfo</action> | |
| 41 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedNamedItems</action> | |
| 42 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedSummary</action> | |
| 43 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedToBed</action> | |
| 44 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigAverageOverBed</action> | |
| 45 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigCorrelate</action> | |
| 46 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigInfo</action> | |
| 47 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigMerge</action> | |
| 48 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigSummary</action> | |
| 49 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph</action> | |
| 50 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToWig</action> | |
| 51 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blastToPsl</action> | |
| 52 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blastXmlToPsl</action> | |
| 53 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/calc</action> | |
| 54 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/catDir</action> | |
| 55 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/catUncomment</action> | |
| 56 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainAntiRepeat</action> | |
| 57 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainFilter</action> | |
| 58 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainMergeSort</action> | |
| 59 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainNet</action> | |
| 60 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainPreNet</action> | |
| 61 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSort</action> | |
| 62 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSplit</action> | |
| 63 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainStitchId</action> | |
| 64 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSwap</action> | |
| 65 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainToAxt</action> | |
| 66 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainToPsl</action> | |
| 67 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkAgpAndFa</action> | |
| 68 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkCoverageGaps</action> | |
| 69 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkHgFindSpec</action> | |
| 70 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkTableCoords</action> | |
| 71 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chopFaLines</action> | |
| 72 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chromGraphFromBin</action> | |
| 73 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chromGraphToBin</action> | |
| 74 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/colTransform</action> | |
| 75 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/countChars</action> | |
| 76 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/crTreeIndexBed</action> | |
| 77 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/crTreeSearchBed</action> | |
| 78 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/dbSnoop</action> | |
| 79 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/dbTrash</action> | |
| 80 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/estOrient</action> | |
| 81 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faCmp</action> | |
| 82 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faCount</action> | |
| 83 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFilter</action> | |
| 84 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFilterN</action> | |
| 85 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFrag</action> | |
| 86 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faNoise</action> | |
| 87 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faOneRecord</action> | |
| 88 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faPolyASizes</action> | |
| 89 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faRandomize</action> | |
| 90 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faRc</action> | |
| 91 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSize</action> | |
| 92 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSomeRecords</action> | |
| 93 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSplit</action> | |
| 94 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToFastq</action> | |
| 95 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTab</action> | |
| 96 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit</action> | |
| 97 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faTrans</action> | |
| 98 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fastqToFa</action> | |
| 99 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/featureBits</action> | |
| 100 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</action> | |
| 101 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/findMotif</action> | |
| 102 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gapToLift</action> | |
| 103 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredCheck</action> | |
| 104 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredHisto</action> | |
| 105 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredSingleCover</action> | |
| 106 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed</action> | |
| 107 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToFakePsl</action> | |
| 108 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToGtf</action> | |
| 109 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToMafFrames</action> | |
| 110 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToGenePred</action> | |
| 111 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToPsl</action> | |
| 112 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gmtime</action> | |
| 113 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGenePred</action> | |
| 114 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/headRest</action> | |
| 115 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgFindSpec</action> | |
| 116 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgGcPercent</action> | |
| 117 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadBed</action> | |
| 118 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadOut</action> | |
| 119 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadWiggle</action> | |
| 120 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgTrackDb</action> | |
| 121 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgWiggle</action> | |
| 122 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgsql</action> | |
| 123 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgsqldump</action> | |
| 124 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/htmlCheck</action> | |
| 125 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hubCheck</action> | |
| 126 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ixIxx</action> | |
| 127 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/lavToAxt</action> | |
| 128 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/lavToPsl</action> | |
| 129 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ldHgGene</action> | |
| 130 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver</action> | |
| 131 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOverMerge</action> | |
| 132 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftUp</action> | |
| 133 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/linesToRa</action> | |
| 134 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/localtime</action> | |
| 135 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafAddIRows</action> | |
| 136 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafAddQRows</action> | |
| 137 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafCoverage</action> | |
| 138 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFetch</action> | |
| 139 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFilter</action> | |
| 140 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFrag</action> | |
| 141 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFrags</action> | |
| 142 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafGene</action> | |
| 143 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafMeFirst</action> | |
| 144 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafOrder</action> | |
| 145 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafRanges</action> | |
| 146 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSpeciesList</action> | |
| 147 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSpeciesSubset</action> | |
| 148 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSplit</action> | |
| 149 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSplitPos</action> | |
| 150 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafToAxt</action> | |
| 151 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafToPsl</action> | |
| 152 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafsInRegion</action> | |
| 153 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/makeTableList</action> | |
| 154 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/maskOutFa</action> | |
| 155 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mktime</action> | |
| 156 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mrnaToGene</action> | |
| 157 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netChainSubset</action> | |
| 158 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netClass</action> | |
| 159 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netFilter</action> | |
| 160 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netSplit</action> | |
| 161 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netSyntenic</action> | |
| 162 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netToAxt</action> | |
| 163 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netToBed</action> | |
| 164 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/newProg</action> | |
| 165 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/nibFrag</action> | |
| 166 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/nibSize</action> | |
| 167 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/oligoMatch</action> | |
| 168 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/overlapSelect</action> | |
| 169 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/paraFetch</action> | |
| 170 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/paraSync</action> | |
| 171 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/positionalTblCheck</action> | |
| 172 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCDnaFilter</action> | |
| 173 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCat</action> | |
| 174 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCheck</action> | |
| 175 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslDropOverlap</action> | |
| 176 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslFilter</action> | |
| 177 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslHisto</action> | |
| 178 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslLiftSubrangeBlat</action> | |
| 179 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslMap</action> | |
| 180 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslMrnaCover</action> | |
| 181 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPairs</action> | |
| 182 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPartition</action> | |
| 183 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPretty</action> | |
| 184 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslRecalcMatch</action> | |
| 185 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslReps</action> | |
| 186 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSelect</action> | |
| 187 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSort</action> | |
| 188 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslStats</action> | |
| 189 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSwap</action> | |
| 190 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToBed</action> | |
| 191 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToChain</action> | |
| 192 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToPslx</action> | |
| 193 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslxToFa</action> | |
| 194 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qaToQac</action> | |
| 195 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacAgpLift</action> | |
| 196 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacToQa</action> | |
| 197 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacToWig</action> | |
| 198 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raSqlQuery</action> | |
| 199 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raToLines</action> | |
| 200 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raToTab</action> | |
| 201 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/randomLines</action> | |
| 202 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/rmFaDups</action> | |
| 203 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/rowsToCols</action> | |
| 204 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/sizeof</action> | |
| 205 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/spacedToTab</action> | |
| 206 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/splitFile</action> | |
| 207 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/splitFileByColumn</action> | |
| 208 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/sqlToXml</action> | |
| 209 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/stringify</action> | |
| 210 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/subChar</action> | |
| 211 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/subColumn</action> | |
| 212 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tailLines</action> | |
| 213 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tdbQuery</action> | |
| 214 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/textHistogram</action> | |
| 215 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tickToDate</action> | |
| 216 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/toLower</action> | |
| 217 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/toUpper</action> | |
| 218 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/trfBig</action> | |
| 219 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitDup</action> | |
| 220 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitInfo</action> | |
| 221 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitMask</action> | |
| 222 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action> | |
| 223 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/validateFiles</action> | |
| 224 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/validateManifest</action> | |
| 225 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigCorrelate</action> | |
| 226 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigEncode</action> | |
| 227 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig</action> | |
| 228 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wordLine</action> | |
| 229 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/xmlCat</action> | |
| 230 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/xmlToSql</action> | |
| 231 <action type="move_directory_files"> | |
| 232 <source_directory>.</source_directory> | |
| 233 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 234 </action> | |
| 235 </actions> | |
| 236 | |
| 237 <actions os="darwin" architecture="x86_64"> | |
| 238 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/addCols</action> | |
| 239 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ameme</action> | |
| 240 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoDtd</action> | |
| 241 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoSql</action> | |
| 242 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoXml</action> | |
| 243 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ave</action> | |
| 244 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/aveCols</action> | |
| 245 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtChain</action> | |
| 246 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtSort</action> | |
| 247 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtSwap</action> | |
| 248 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtToMaf</action> | |
| 249 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtToPsl</action> | |
| 250 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedClip</action> | |
| 251 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedCommonRegions</action> | |
| 252 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedCoverage</action> | |
| 253 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedExtendRanges</action> | |
| 254 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGeneParts</action> | |
| 255 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</action> | |
| 256 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedIntersect</action> | |
| 257 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedItemOverlapCount</action> | |
| 258 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedPileUps</action> | |
| 259 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedRemoveOverlap</action> | |
| 260 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedRestrictToPositions</action> | |
| 261 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedSort</action> | |
| 262 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToBigBed</action> | |
| 263 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToExons</action> | |
| 264 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToGenePred</action> | |
| 265 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToPsl</action> | |
| 266 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedWeedOverlapping</action> | |
| 267 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedInfo</action> | |
| 268 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedNamedItems</action> | |
| 269 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedSummary</action> | |
| 270 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedToBed</action> | |
| 271 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigAverageOverBed</action> | |
| 272 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigCorrelate</action> | |
| 273 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigInfo</action> | |
| 274 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigMerge</action> | |
| 275 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigSummary</action> | |
| 276 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToBedGraph</action> | |
| 277 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToWig</action> | |
| 278 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blastToPsl</action> | |
| 279 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blastXmlToPsl</action> | |
| 280 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blat</action> | |
| 281 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/calc</action> | |
| 282 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/catDir</action> | |
| 283 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/catUncomment</action> | |
| 284 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainAntiRepeat</action> | |
| 285 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainFilter</action> | |
| 286 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainMergeSort</action> | |
| 287 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainNet</action> | |
| 288 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainPreNet</action> | |
| 289 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSort</action> | |
| 290 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSplit</action> | |
| 291 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainStitchId</action> | |
| 292 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSwap</action> | |
| 293 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainToAxt</action> | |
| 294 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainToPsl</action> | |
| 295 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkAgpAndFa</action> | |
| 296 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkCoverageGaps</action> | |
| 297 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkHgFindSpec</action> | |
| 298 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkTableCoords</action> | |
| 299 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chopFaLines</action> | |
| 300 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chromGraphFromBin</action> | |
| 301 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chromGraphToBin</action> | |
| 302 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/colTransform</action> | |
| 303 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/countChars</action> | |
| 304 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/crTreeIndexBed</action> | |
| 305 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/crTreeSearchBed</action> | |
| 306 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/dbSnoop</action> | |
| 307 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/dbTrash</action> | |
| 308 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/estOrient</action> | |
| 309 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faCmp</action> | |
| 310 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faCount</action> | |
| 311 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFilter</action> | |
| 312 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFilterN</action> | |
| 313 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFrag</action> | |
| 314 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faNoise</action> | |
| 315 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faOneRecord</action> | |
| 316 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faPolyASizes</action> | |
| 317 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faRandomize</action> | |
| 318 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faRc</action> | |
| 319 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSize</action> | |
| 320 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSomeRecords</action> | |
| 321 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSplit</action> | |
| 322 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToFastq</action> | |
| 323 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTab</action> | |
| 324 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTwoBit</action> | |
| 325 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faTrans</action> | |
| 326 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/fastqToFa</action> | |
| 327 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/featureBits</action> | |
| 328 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/fetchChromSizes</action> | |
| 329 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/findMotif</action> | |
| 330 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gapToLift</action> | |
| 331 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredCheck</action> | |
| 332 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredHisto</action> | |
| 333 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredSingleCover</action> | |
| 334 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToBed</action> | |
| 335 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToFakePsl</action> | |
| 336 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToGtf</action> | |
| 337 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToMafFrames</action> | |
| 338 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gfClient</action> | |
| 339 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gfServer</action> | |
| 340 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gff3ToGenePred</action> | |
| 341 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gff3ToPsl</action> | |
| 342 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gmtime</action> | |
| 343 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gtfToGenePred</action> | |
| 344 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/headRest</action> | |
| 345 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgFindSpec</action> | |
| 346 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgGcPercent</action> | |
| 347 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadBed</action> | |
| 348 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadOut</action> | |
| 349 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadWiggle</action> | |
| 350 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgTrackDb</action> | |
| 351 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgWiggle</action> | |
| 352 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgsql</action> | |
| 353 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgsqldump</action> | |
| 354 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/htmlCheck</action> | |
| 355 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hubCheck</action> | |
| 356 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ixIxx</action> | |
| 357 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/lavToAxt</action> | |
| 358 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/lavToPsl</action> | |
| 359 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ldHgGene</action> | |
| 360 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver</action> | |
| 361 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOverMerge</action> | |
| 362 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftUp</action> | |
| 363 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/linesToRa</action> | |
| 364 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/localtime</action> | |
| 365 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafAddIRows</action> | |
| 366 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafAddQRows</action> | |
| 367 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafCoverage</action> | |
| 368 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFetch</action> | |
| 369 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFilter</action> | |
| 370 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFrag</action> | |
| 371 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFrags</action> | |
| 372 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafGene</action> | |
| 373 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafMeFirst</action> | |
| 374 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafOrder</action> | |
| 375 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafRanges</action> | |
| 376 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSpeciesList</action> | |
| 377 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSpeciesSubset</action> | |
| 378 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSplit</action> | |
| 379 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSplitPos</action> | |
| 380 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafToAxt</action> | |
| 381 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafToPsl</action> | |
| 382 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafsInRegion</action> | |
| 383 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/makeTableList</action> | |
| 384 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/maskOutFa</action> | |
| 385 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mktime</action> | |
| 386 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mrnaToGene</action> | |
| 387 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netChainSubset</action> | |
| 388 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netClass</action> | |
| 389 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netFilter</action> | |
| 390 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netSplit</action> | |
| 391 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netSyntenic</action> | |
| 392 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netToAxt</action> | |
| 393 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netToBed</action> | |
| 394 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/newProg</action> | |
| 395 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/nibFrag</action> | |
| 396 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/nibSize</action> | |
| 397 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/oligoMatch</action> | |
| 398 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/overlapSelect</action> | |
| 399 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/paraFetch</action> | |
| 400 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/paraSync</action> | |
| 401 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/positionalTblCheck</action> | |
| 402 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCDnaFilter</action> | |
| 403 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCat</action> | |
| 404 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCheck</action> | |
| 405 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslDropOverlap</action> | |
| 406 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslFilter</action> | |
| 407 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslHisto</action> | |
| 408 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslLiftSubrangeBlat</action> | |
| 409 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslMap</action> | |
| 410 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslMrnaCover</action> | |
| 411 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPairs</action> | |
| 412 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPartition</action> | |
| 413 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPretty</action> | |
| 414 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslRecalcMatch</action> | |
| 415 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslReps</action> | |
| 416 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSelect</action> | |
| 417 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSort</action> | |
| 418 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslStats</action> | |
| 419 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSwap</action> | |
| 420 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToBed</action> | |
| 421 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToChain</action> | |
| 422 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToPslx</action> | |
| 423 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslxToFa</action> | |
| 424 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qaToQac</action> | |
| 425 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacAgpLift</action> | |
| 426 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacToQa</action> | |
| 427 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacToWig</action> | |
| 428 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raSqlQuery</action> | |
| 429 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raToLines</action> | |
| 430 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raToTab</action> | |
| 431 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/randomLines</action> | |
| 432 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/rmFaDups</action> | |
| 433 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/rowsToCols</action> | |
| 434 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/sizeof</action> | |
| 435 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/spacedToTab</action> | |
| 436 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/splitFile</action> | |
| 437 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/splitFileByColumn</action> | |
| 438 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/sqlToXml</action> | |
| 439 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/stringify</action> | |
| 440 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/subChar</action> | |
| 441 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/subColumn</action> | |
| 442 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tailLines</action> | |
| 443 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tdbQuery</action> | |
| 444 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/textHistogram</action> | |
| 445 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tickToDate</action> | |
| 446 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/toLower</action> | |
| 447 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/toUpper</action> | |
| 448 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/trfBig</action> | |
| 449 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitDup</action> | |
| 450 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitInfo</action> | |
| 451 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitMask</action> | |
| 452 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action> | |
| 453 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/validateFiles</action> | |
| 454 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/validateManifest</action> | |
| 455 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigCorrelate</action> | |
| 456 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigEncode</action> | |
| 457 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigToBigWig</action> | |
| 458 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wordLine</action> | |
| 459 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/xmlCat</action> | |
| 460 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/xmlToSql</action> | |
| 461 <action type="shell_command">chmod ugo+x *</action> | |
| 462 <action type="move_directory_files"> | |
| 463 <source_directory>.</source_directory> | |
| 464 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 465 </action> | |
| 466 </actions> | |
| 467 | |
| 5 <actions> | 468 <actions> |
| 6 <action type="download_by_url" target_filename="kent.zip">http://hgdownload.cse.ucsc.edu/admin/jksrc.zip</action> | 469 <action type="download_by_url" target_filename="kent.zip">http://hgdownload.cse.ucsc.edu/admin/jksrc.zip</action> |
| 7 <action type="shell_command"> | 470 <action type="shell_command"> |
| 8 export MACHTYPE=`uname -m`; | 471 export MACHTYPE=`uname -m`; |
| 9 export BINDIR=$INSTALL_DIR/bin; mkdir $INSTALL_DIR/bin; | 472 export BINDIR=$INSTALL_DIR/bin; mkdir $INSTALL_DIR/bin; |
| 12 cd ../blat; make; | 475 cd ../blat; make; |
| 13 cd ../gfClient; make; | 476 cd ../gfClient; make; |
| 14 cd ../gfServer; make; | 477 cd ../gfServer; make; |
| 15 cd ../utils; mv makefile makefile.orig; grep -v -E 'pslLiftSubrangeBlat|raSqlQuery|scaffoldFaToAgp' makefile.orig > makefile; make | 478 cd ../utils; mv makefile makefile.orig; grep -v -E 'pslLiftSubrangeBlat|raSqlQuery|scaffoldFaToAgp' makefile.orig > makefile; make |
| 16 </action> | 479 </action> |
| 17 <action type="set_environment"> | 480 </actions> |
| 18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 481 <action type="set_environment"> |
| 482 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 19 </action> | 483 </action> |
| 20 </actions> | 484 </actions_group> |
| 21 </install> | 485 </install> |
| 22 <readme> | 486 <readme> |
| 23 Downloads and installs the latest kent tools from UCSC at: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip | 487 Downloads and installs the latest kent tools from UCSC at: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip |
| 24 ( The website doesn't offer previously released versions.) | 488 ( The website doesn't offer previously released versions.) |
| 25 | 489 |
| 26 NOTE: This only handles blat for a NON-COMMERCIAL system. | 490 NOTE: A license is required for use in a COMMERCIAL system. |
| 27 | 491 |
| 28 Blat source and executables are freely available for academic, nonprofit and personal use. | 492 Blat source and executables are freely available for academic, nonprofit and personal use. |
| 29 Commercial licensing information is available on the Kent Informatics website (http://www.kentinformatics.com/). | 493 Commercial licensing information is available on the Kent Informatics website (http://www.kentinformatics.com/). |
| 30 | 494 |
| 31 </readme> | 495 </readme> |