Mercurial > repos > jjohnson > package_hisat_0_1_0_beta
changeset 1:9dc3a38a440e default tip
Add extract_splice_sites.py for converting GTF files
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 25 Jul 2014 11:13:18 -0500 |
| parents | 53ed3caf1d9d |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 15 insertions(+), 0 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Jul 22 08:45:16 2014 -0400 +++ b/tool_dependencies.xml Fri Jul 25 11:13:18 2014 -0500 @@ -21,6 +21,10 @@ <source>hisat-inspect</source> <destination>$INSTALL_DIR/bin</destination> </action> + <action type="move_file"> + <source>extract_splice_sites.py</source> + <destination>$INSTALL_DIR/bin</destination> + </action> </actions> <actions architecture="x86_64" os="darwin"> <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-OSX_x86_64.zip</action> @@ -40,6 +44,10 @@ <source>hisat-inspect</source> <destination>$INSTALL_DIR/bin</destination> </action> + <action type="move_file"> + <source>extract_splice_sites.py</source> + <destination>$INSTALL_DIR/bin</destination> + </action> </actions> <actions> <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-source.zip</action> @@ -60,6 +68,10 @@ <source>hisat-inspect</source> <destination>$INSTALL_DIR/bin</destination> </action> + <action type="move_file"> + <source>extract_splice_sites.py</source> + <destination>$INSTALL_DIR/bin</destination> + </action> </actions> </actions_group> <actions> @@ -75,6 +87,9 @@ <action type="chmod"> <file mode="750">$INSTALL_DIR/bin/hisat-inspect</file> </action> + <action type="chmod"> + <file mode="750">$INSTALL_DIR/bin/extract_splice_sites.py</file> + </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action>