# HG changeset patch
# User jjohnson
# Date 1370463985 14400
# Node ID 03bb09b717ae76c89cdec30cb3b99e956bf4cd9c

Uploaded

diff -r 000000000000 -r 03bb09b717ae tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jun 05 16:26:25 2013 -0400
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gmap" version="2013-05-09">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="gmap-2013-05-09.tar.gz">http://research-pub.gene.com/gmap/src/gmap-gsnap-2013-05-09.tar.gz</action>
+                <action type="shell_command"> ./configure --prefix=`pwd` --with-gmapdb=$INSTALL_DIR/gmapdb</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">make install</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>