comparison tool_dependencies.xml @ 0:03bb09b717ae

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0:03bb09b717ae

<?xml version="1.0"?>
<tool_dependency>
    <package name="gmap" version="2013-05-09">
        <install version="1.0">
            <actions>
                <action type="download_by_url" target_filename="gmap-2013-05-09.tar.gz">http://research-pub.gene.com/gmap/src/gmap-gsnap-2013-05-09.tar.gz</action>
                <action type="shell_command"> ./configure --prefix=`pwd` --with-gmapdb=$INSTALL_DIR/gmapdb</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>