Mercurial > repos > jjohnson > package_amos_3_1_0
changeset 0:8ed847ebac73
Uploaded
| author | jjohnson |
|---|---|
| date | Wed, 17 Jul 2013 17:31:18 -0400 |
| parents | |
| children | b5e98e4efb18 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 26 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Jul 17 17:31:18 2013 -0400 @@ -0,0 +1,26 @@ +<?xml version='1.0' encoding='utf-8'?> +<tool_dependency> + <package name="boost" version="1.53.0"> + <repository changeset_revision="a72f8efe9201" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + </package> + <package name="mummer" version="3.23"> + <repository changeset_revision="8268327cce24" name="package_mummer_3_23" owner="jjohnson" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + </package> + <package name="amos" version="3.1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://sourceforge.net/projects/amos/files/amos/3.1.0/amos-3.1.0.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +http://sourceforge.net/projects/amos/ +AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation. + </readme> + </package> +</tool_dependency>