diff tool_dependencies.xml @ 0:8ed847ebac73

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jul 17 17:31:18 2013 -0400
@@ -0,0 +1,26 @@
+<?xml version='1.0' encoding='utf-8'?>
+<tool_dependency>
+    <package name="boost" version="1.53.0">
+        <repository changeset_revision="a72f8efe9201" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="mummer" version="3.23">
+        <repository changeset_revision="8268327cce24" name="package_mummer_3_23" owner="jjohnson" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+    </package>
+    <package name="amos" version="3.1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/amos/files/amos/3.1.0/amos-3.1.0.tar.gz</action>
+                <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+                <action type="shell_command">make</action>
+                <action type="shell_command">make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+http://sourceforge.net/projects/amos/
+AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
+        </readme>
+    </package>
+</tool_dependency>