Mercurial > repos > jjohnson > mzsqlite_psm_align
comparison mzsqlite_psm_align.xml @ 6:100cff4db790 draft default tip
planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/mzsqlite_psm_align commit ae4270ce6b1052d7eaac8e1e816263ad17f3db51-dirty
| author | jjohnson |
|---|---|
| date | Tue, 10 Apr 2018 11:58:31 -0400 |
| parents | af5f22779a8e |
| children |
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| 5:af5f22779a8e | 6:100cff4db790 |
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| 16 --twobit='$ref.ref_loc.fields.path' | 16 --twobit='$ref.ref_loc.fields.path' |
| 17 #elif $ref.ref_source == 'history': | 17 #elif $ref.ref_source == 'history': |
| 18 --twobit='$ref.ref_file' | 18 --twobit='$ref.ref_file' |
| 19 #end if | 19 #end if |
| 20 #if $gffutilsdb: | 20 #if $gffutilsdb: |
| 21 --gffutils_file '$gffutilsdb' | 21 --gffutils_sqlite '$gffutilsdb' |
| 22 #end if | 22 #end if |
| 23 #if $readlignments: | 23 #if $readlignments: |
| 24 --reads_bam 'input.bam' | 24 --reads_bam 'input.bam' |
| 25 #end if | 25 #end if |
| 26 #if 'probed' in str($output_formats).split(','): | 26 #if 'probed' in str($output_formats).split(','): |