Mercurial > repos > jjohnson > msconvert_win
view job_conf.xml.sample @ 0:b60f7012923b draft default tip
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author | jjohnson |
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date | Wed, 25 Nov 2015 14:49:54 -0500 |
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<?xml version="1.0"?> <job_conf> <plugins workers="4"> <!-- "workers" is the number of threads for the runner's work queue. The default from <plugins> is used if not defined for a <plugin>. --> <plugin id="plugin_local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/> <plugin id="plugin_pulsar_rest" type="runner" load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner"> <!-- Allow optimized HTTP calls with libcurl (defaults to urllib) --> <!-- <param id="transport">curl</param> --> <!-- *Experimental Caching*: Next parameter enables caching. Likely will not work with newer features such as MQ support. If this is enabled be sure to specify a `file_cache_dir` in the remote Pulsar's servers main configuration file. --> <!-- <param id="cache">True</param> --> </plugin> </plugins> <destinations default="destination_local"> <destination id="destination_local" runner="plugin_local"/> <destination id="destination_winserver_pulsar_rest" runner="plugin_pulsar_rest"> <param id="manager">_default_</param> <param id="url">http://winserver.myu.edu:8900/</param> <!-- If set, private_token must match token in remote Pulsar's configuration. --> <param id="private_token">your_ultra-secret_magic_token_here</param> <!-- Uncomment the following statement to disable file staging (e.g. if there is a shared file system between Galaxy and the Pulsar server). Alternatively action can be set to 'copy' - to replace http transfers with file system copies, 'remote_transfer' to cause the Pulsar to initiate HTTP transfers instead of Galaxy, or 'remote_copy' to cause Pulsar to initiate file system copies. If setting this to 'remote_transfer' be sure to specify a 'galaxy_url' attribute on the runner plugin above. --> <!-- <param id="default_file_action">none</param> --> <!-- The above option is just the default, the transfer behavior none|copy|http can be configured on a per path basis via the following file. See Pulsar documentation for more details and examples. --> <!-- <param id="file_action_config">file_actions.yaml</param> --> <!-- The non-legacy Pulsar runners will attempt to resolve Galaxy dependencies remotely - to enable this set a tool_dependency_dir in Pulsar's configuration (can work with all the same dependency resolutions mechanisms as Galaxy - tool Shed installs, Galaxy packages, etc...). To disable this behavior, set the follow parameter to none. To generate the dependency resolution command locally set the following parameter local. --> <!-- <param id="dependency_resolution">none</params> --> <!-- Uncomment following option to enable setting metadata on remote Pulsar server. The 'use_remote_datatypes' option is available for determining whether to use remotely configured datatypes or local ones (both alternatives are a little brittle). --> <!-- <param id="remote_metadata">true</param> --> <!-- <param id="use_remote_datatypes">false</param> --> <!-- <param id="remote_property_galaxy_home">/path/to/remote/galaxy-central</param> --> <!-- If remote Pulsar server is configured to run jobs as the real user, uncomment the following line to pass the current Galaxy user along. --> <!-- <param id="submit_user">$__user_name__</param> --> <!-- Various other submission parameters can be passed along to the Pulsar whose use will depend on the remote Pulsar's configured job manager. For instance: --> <!-- <param id="submit_native_specification">-P bignodes -R y -pe threads 8</param> --> <!-- Disable parameter rewriting and rewrite generated commands instead. This may be required if remote host is Windows machine but probably not otherwise. --> <!-- <param id="rewrite_parameters">false</params> --> </destination> </destinations> <tools> <tool id="msconvert_win" destination="destination_winserver_pulsar_rest"/> </tools> </job_conf>