Mercurial > repos > jjohnson > mothur_toolsuite

changeset 11:2ab2418616af draft

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tool_dependencies.xml - now working, added chmod for uchime_src/mk, and changed move_file
author Jim Johnson <jj@umn.edu>
date Fri, 30 Nov 2012 10:51:36 -0600
parents 51a065071567
children 2088a8d469c9
files mothur/tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/mothur/tool_dependencies.xml	Fri Nov 30 09:53:52 2012 -0600
+++ b/mothur/tool_dependencies.xml	Fri Nov 30 10:51:36 2012 -0600
@@ -1,16 +1,17 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="mothur" version="1.27.0">
+    <package name="mothur" version="1.27">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip</action>
+                <action type="shell_command">chmod u+x Mothur.source/uchime_src/mk</action>
                 <action type="shell_command">cd Mothur.source &amp;&amp; make</action>
                 <action type="move_file">
-                    <source>mothur</source>
+                    <source>Mothur.source/mothur</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">
-                    <source>uchime</source>
+                    <source>Mothur.source/uchime</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="set_environment">