diff mothur/tool_dependencies.xml @ 7:3cfe41810949 draft

Update to mothur v 1.27

--- a/mothur/tool_dependencies.xml	Tue Nov 27 09:04:17 2012 -0600
+++ b/mothur/tool_dependencies.xml	Fri Nov 30 08:16:51 2012 -0600
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="mothur" version="1.24.0">
+    <package name="mothur" version="1.27">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://www.mothur.org/w/images/0/09/Mothur.1.24.1.zip</action>
+                <action type="download_by_url">http://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip</action>
                 <action type="shell_command">cd Mothur.source</action>
                 <action type="shell_command">sed -i .bak -e 's/-lcurses/-lncurses/g' Makefile</action>
                 <action type="shell_command">make</action>
@@ -17,6 +17,7 @@
                 </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="MOTHUR_MAX_PROCESSORS" action="set_to">2</environment_variable>
                 </action>
             </actions>
         </install>
@@ -31,5 +32,8 @@
 
         </readme>
     </package>
+    <!-- 
+      http://supfam.cs.bris.ac.uk/TreeVector/treevectorsource.zip
+    -->
 </tool_dependency>