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comparison mothur/README @ 7:3cfe41810949 draft

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Update to mothur v 1.27
author Jim Johnson <jj@umn.edu>
date Fri, 30 Nov 2012 08:16:51 -0600
parents 6b358d0f17b4
children 216bf44bf185
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6:1bfd4a8ecb3d 7:3cfe41810949
1 Provides galaxy tools for the Mothur metagenomics package - http://www.mothur.org/wiki/Main_Page 1 Provides galaxy tools for the Mothur metagenomics package - http://www.mothur.org/wiki/Main_Page
2 2
3 (The environment variable MOTHUR_MAX_PROCESSORS can be used to limit the number of cpu processors used be mothur commands) 3 (The environment variable MOTHUR_MAX_PROCESSORS can be used to limit the number of cpu processors used be mothur commands)
4 4
5 Install mothur v.1.25.0 on your galaxy system so galaxy can execute the mothur command 5 Mothur should be able to be auto installed as a tool_dependency, otherwise:
6 ( This version of wrappers is designed for Mothur version 1.24 - it may work on later versions ) 6 Install mothur v.1.27 on your galaxy system so galaxy can execute the mothur command
7 ( This version of wrappers is designed for Mothur version 1.27 - it may work on later versions )
7 http://www.mothur.org/wiki/Download_mothur 8 http://www.mothur.org/wiki/Download_mothur
8 http://www.mothur.org/wiki/Installation 9 http://www.mothur.org/wiki/Installation
9 ( This Galaxy Mothur wrapper will invoke Mothur in command line mode: http://www.mothur.org/wiki/Command_line_mode ) 10 ( This Galaxy Mothur wrapper will invoke Mothur in command line mode: http://www.mothur.org/wiki/Command_line_mode )
10 11
11 TreeVector is also packaged with this Mothur package to view phylogenetic trees: 12 TreeVector is also packaged with this Mothur package to view phylogenetic trees: