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view tool_dependencies.xml @ 1:868624c77941 draft

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Add tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Tue, 09 Oct 2012 15:53:06 -0500
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children d90db1d506c4
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="METAPHLAN_BASE" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>
    <package name="metaphlan" version="1.7.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">hg clone https://bitbucket.org/nsegata/metaphlan -u 43684e5f6dc5</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
These links provide information for the metaphlan package:
http://huttenhower.sph.harvard.edu/metaphlan
https://groups.google.com/forum/#!forum/metaphlan-users
        </readme>
    </package>
</tool_dependency>