Mercurial > repos > jjohnson > metaphlan

diff metaphlan.xml @ 6:a3068eb6b676 draft

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Add python to command line to aloow for non-standard location
author Jim Johnson <jj@umn.edu>
date Wed, 10 Oct 2012 12:49:41 -0500
parents 61f300dbc6ac
children db6ad024e739
line wrap: on
line diff
--- a/metaphlan.xml	Wed Oct 10 12:35:51 2012 -0500
+++ b/metaphlan.xml	Wed Oct 10 12:49:41 2012 -0500
@@ -4,8 +4,8 @@
     <requirement type="package">bowtie2</requirement>
   </requirements>
   <description>Metagenomic Phylogenetic Analysis</description>
-  <command interpreter="python">
-	  \${METAPHLAN_PATH}/metaphlan.py 
+  <command>
+	  python \${METAPHLAN_PATH}/metaphlan.py 
 	  $input  
 	  --bowtie2db \${METAPHLAN_PATH}/bowtie2db/mpa  
 	  --no_map