Mercurial > repos > jjohnson > metaphlan
comparison metaphlan.xml @ 1:868624c77941 draft
Add tool_dependencies.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 09 Oct 2012 15:53:06 -0500 |
| parents | 0ec6c5781381 |
| children | 51288d868a5c |
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| 0:0ec6c5781381 | 1:868624c77941 |
|---|---|
| 1 <tool id="metaphlan" name="MetaPhlAn" version="1.6.0"> | 1 <tool id="metaphlan" name="MetaPhlAn" version="1.7.0"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package">metaphlan</requirement> | 3 <requirement type="set_environment">METAPHLAN_BASE</requirement> |
| 4 <requirement type="package">bowtie2</requirement> | 4 <requirement type="package" version="1.7.0">metaphlan</requirement> |
| 5 <requirement type="package">bowtie2</requirement> | |
| 5 </requirements> | 6 </requirements> |
| 6 <description>Metagenomic Phylogenetic Analysis</description> | 7 <description>Metagenomic Phylogenetic Analysis</description> |
| 7 <command> | 8 <command> |
| 8 metaphlan.py | 9 metaphlan.py |
| 9 $input | 10 $input |
| 10 --bowtie2db ${GALAXY_DATA_INDEX_DIR}/shared/metaphlan/bowtie2db/mpa | 11 --bowtie2db ${METAPHLAN_BASE}/bowtie2db/mpa |
| 11 --no_map | 12 --no_map |
| 12 -o $output | 13 -o $output |
| 13 --bt2_ps $PresetsForBowtie2 | 14 --bt2_ps $PresetsForBowtie2 |
| 14 </command> | 15 </command> |
| 15 | 16 |