Mercurial > repos > jjohnson > metaphlan
comparison tool_dependencies.xml @ 3:51288d868a5c draft
tool_dependencies.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 10 Oct 2012 08:33:33 -0500 |
| parents | d90db1d506c4 |
| children |
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| 2:d90db1d506c4 | 3:51288d868a5c |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable name="METAPHLAN_BASE" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | |
| 5 </set_environment> | |
| 6 <package name="metaphlan" version="1.7.0"> | 3 <package name="metaphlan" version="1.7.0"> |
| 7 <install version="1.0"> | 4 <install version="1.0"> |
| 8 <actions> | 5 <actions> |
| 9 <action type="shell_command">hg clone http://bitbucket.org/nsegata/metaphlan</action> | 6 <action type="shell_command">hg clone http://bitbucket.org/nsegata/metaphlan</action> |
| 7 <action type="move_directory_files"> | |
| 8 <source_directory>.</source_directory> | |
| 9 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 10 </action> | |
| 10 <action type="set_environment"> | 11 <action type="set_environment"> |
| 11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 12 </action> | 13 </action> |
| 14 <action type="set_environment"> | |
| 15 <environment_variable name="METAPHLAN_PATH" action="set_to">$INSTALL_DIR</environment_variable> | |
| 16 </action> | |
| 17 | |
| 13 </actions> | 18 </actions> |
| 14 </install> | 19 </install> |
| 15 <readme> | 20 <readme> |
| 16 These links provide information for the metaphlan package: | 21 These links provide information for the metaphlan package: |
| 17 http://huttenhower.sph.harvard.edu/metaphlan | 22 http://huttenhower.sph.harvard.edu/metaphlan |