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comparison metaphlan.xml @ 4:3468e70d3ed0 draft

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author Jim Johnson <jj@umn.edu>
date Wed, 10 Oct 2012 08:49:28 -0500
parents 51288d868a5c
children 61f300dbc6ac
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3:51288d868a5c 4:3468e70d3ed0
1 <tool id="metaphlan" name="MetaPhlAn" version="1.7.0"> 1 <tool id="metaphlan" name="MetaPhlAn" version="1.7.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.7.0">metaphlan</requirement> 3 <requirement type="package" version="1.7.0">metaphlan</requirement>
4 <requirement type="package">bowtie2</requirement> 4 <requirement type="package">bowtie2</requirement>
5 </requirements> 5 </requirements>
6 <description>Metagenomic Phylogenetic Analysis</description> 6 <description>Metagenomic Phylogenetic Analysis</description>
7 <command> 7 <command>
8 metaphlan.py 8 metaphlan.py
9 $input 9 $input
10 --bowtie2db \${METAPHLAN_PATH}/bowtie2db/mpa 10 --bowtie2db \${METAPHLAN_PATH}/bowtie2db/mpa