# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351618870 18000
# Node ID 44673f6f1f6da65f1ca41b7f33c3d7170fd2c655
# Parent  de6dceb651368f39c4097a2826958f507ecb1083
Set --prefix for install

diff -r de6dceb65136 -r 44673f6f1f6d tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 30 12:38:17 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 30 12:41:10 2012 -0500
@@ -14,7 +14,7 @@
                 <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl \-\-prefix $INSTALL_DIR \-\-taxonomy $INSTALL_DIR/taxonomy</action>
                 -->
                 <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ -->
-                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl </action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR</action>
                 <!-- Down load and process NCBI Taxonomy data, the  updateTaxonomy.sh script relies on the curl command -->
                 <action type="shell_command">cd $INSTALL_DIR &amp;&amp; if curl --help 2>i1 > /dev/null; then ./updateTaxonomy.sh; fi</action>
                 <!-- copy javascript to galaxy/static/krona/