Mercurial > repos > jjohnson > krona_tools

diff tool_dependencies.xml @ 6:c74f1ea02e29 draft

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xml escapes in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Tue, 30 Oct 2012 12:34:46 -0500
parents f9fc927e56c3
children de6dceb65136
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Oct 30 12:25:52 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 30 12:34:46 2012 -0500
@@ -11,7 +11,7 @@
                 <!-- Downloaded NCBI taxonomy will be over 1.8GB after processing,  Instead of $INSTALL_DIR/  maybe should be in a galaxy data dir -->
                 <!--  The KronaTools tar includes an empty taxonomy dir
                 <action type="make_directory">$INSTALL_DIR/taxonomy</action>
-                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl \-\-prefix $INSTALL_DIR \-\-taxonomy $INSTALL_DIR/taxonomy</action>
                 -->
                 <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ -->
                 <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR</action>