diff tool_dependencies.xml @ 1:53258f6dddd3 draft

Add tool_dependencies.xml

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Oct 29 13:52:47 2012 -0500
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="KronaTools" version="2.2">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/krona/files/KronaTools%20%28Mac%2C%20Linux%29/KronaTools-2.2.tar</action>
+                <!-- Instaead of $INSTALL_DIR/  this could be in a data dir -->
+                <action type="make_directory">$INSTALL_DIR/taxonomy</action>
+                <action type="shell_command">perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action>
+                <action type="shell_command">./updateTaxonomy.sh</action>
+                <!-- copy javascript to galaxy/static/krona/ dir 
+                <action type="shell_command">./deployResources.sh /static/krona</action>
+                -->
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>http://sourceforge.net/p/krona/home/krona/</readme>
+    </package>
+</tool_dependency>